RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 MOGAT1Q96PD6 335 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 NDUFB11Q9NX14 153 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 CSNK1G3Q9Y6M4 447 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 MFSD2BA6NFX1 497 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 OR5H14A6NHG9 310 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 GDF5P43026 501 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 ARSJQ5FYB0 599 aaPredicted RBP12.36□□□□□ -0.43
USP40-208ENST00000450966 B3GNTL1Q67FW5 361 aaPredicted RBP12.36□□□□□ -0.43
USP40-208ENST00000450966 OR13C9Q8NGT0 318 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 POLDIP3Q9BY77 421 aaKnown RBP12.36□□□□□ -0.43
USP40-208ENST00000450966 IGSF5Q9NSI5 407 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 MYADML2A6NDP7 307 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 ZNF724A8MTY0 619 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 ADAM11O75078 769 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 SEMA4FO95754 770 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 MGST1P10620 155 aaKnown RBP12.36□□□□□ -0.43
USP40-208ENST00000450966 CRABP1P29762 137 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 RAB11AP62491 216 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 UMODL1-AS1Q8N2C9 162 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 SLC24A4Q8NFF2 622 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 OR1S1Q8NH92 325 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 GPR174Q9BXC1 333 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 ACAD8Q9UKU7 415 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 B3GALT1Q9Y5Z6 326 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 SERPINA5P05154 406 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 CFHP08603 1231 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 FDXRP22570 491 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 TIA1P31483 386 aaKnown RBP eCLIP12.36□□□□□ -0.43
USP40-208ENST00000450966 KCNJ10P78508 379 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 ENDOGQ14249 297 aaKnown RBP12.36□□□□□ -0.43
USP40-208ENST00000450966 FAM109BQ6ICB4 259 aaPredicted RBP12.36□□□□□ -0.43
USP40-208ENST00000450966 GALNT10Q86SR1 603 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 WDFY2Q96P53 400 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 ZIC5Q96T25 663 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 SGIP1Q9BQI5 828 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 SLC25A18Q9H1K4 315 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 PCDHB10Q9UN67 800 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 RGPD5Q99666 1765 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 TRPM3Q9HCF6 1732 aaPredicted RBP12.36□□□□□ -0.43
USP40-208ENST00000450966 F3P13726 295 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 AHRP35869 848 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 GNG10P50151 68 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 RAB31Q13636 194 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 CST6Q15828 149 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 LYPD8Q6UX82 237 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 OR9A1PQ8NGU1 263 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 FIBINQ8TAL6 211 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 AKR1E2Q96JD6 320 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 NRIP3Q9NQ35 241 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 MED17Q9NVC6 651 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 OARD1Q9Y530 152 aa12.36□□□□□ -0.43
USP40-208ENST00000450966 GPX5O75715 221 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 H2AFB1P0C5Y9 115 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 MPC1LP0DKB6 136 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 PSMB3P49720 205 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 TP53I3Q53FA7 332 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 ZDHHC14Q8IZN3 488 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 C9orf62Q8N4C0 152 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 PHOSPHO1Q8TCT1 267 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 SMIM12Q96EX1 92 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 UHRF2Q96PU4 802 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 MBOAT4Q96T53 435 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 BTNL2Q9UIR0 455 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 DLG5Q8TDM6 1919 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 TBX19O60806 448 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 ACHEP22303 614 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 RFX2P48378 723 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 CARD18P57730 90 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 AGTRAPQ6RW13 159 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 TRMT2BQ96GJ1 504 aaKnown RBP12.35□□□□□ -0.43
USP40-208ENST00000450966 TOE1Q96GM8 510 aaKnown RBP12.35□□□□□ -0.43
USP40-208ENST00000450966 PITX2Q99697 317 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 OR51I2Q9H344 312 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 PRDM7Q9NQW5 492 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 RALYQ9UKM9 306 aaKnown RBP12.35□□□□□ -0.43
USP40-208ENST00000450966 DVL1P1P54792 670 aaPredicted RBP12.35□□□□□ -0.43
USP40-208ENST00000450966 ARHGAP19Q14CB8 494 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 LIPNQ5VXI9 398 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 RPUSD3Q6P087 351 aaKnown RBP12.35□□□□□ -0.43
USP40-208ENST00000450966 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP40-208ENST00000450966 ZNF620Q6ZNG0 422 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 NANOGP1Q8N7R0 232 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 MRPL43Q8N983 215 aaKnown RBP12.35□□□□□ -0.43
USP40-208ENST00000450966 OR2D3Q8NGH3 330 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 ELOVL1Q9BW60 279 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 SEC11CQ9BY50 192 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 ZNF552Q9H707 407 aaPredicted RBP12.35□□□□□ -0.43
USP40-208ENST00000450966 C5P01031 1676 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 A6NCN8 305 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 CX3CR1P49238 355 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 LMAN2Q12907 356 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 SLC9A3R2Q15599 337 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 EXD3Q8N9H8 876 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 OR2AK2Q8NG84 335 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 OR14L1PQ8NHC6 308 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 TAS2R5Q9NYW4 299 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 PRODH2Q9UF12 536 aa12.35□□□□□ -0.43
USP40-208ENST00000450966 NPIPA5A0A0B4J1W7 369 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 HLA-DOBP13765 273 aa12.34□□□□□ -0.43
USP40-208ENST00000450966 LYSMD4Q5XG99 296 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms