RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 RASSF5Q8WWW0 418 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 GTF2H4Q92759 462 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 C3orf49Q96BT1 292 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 SPDL1Q96EA4 605 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 SH3GL1Q99961 368 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 SIKE1Q9BRV8 207 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 C1QTNF6Q9BXI9 259 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 TMEM38AQ9H6F2 299 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 RLIMQ9NVW2 624 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 TESQ9UGI8 421 aaKnown RBP6.8□□□□□ -1.32
CD44-211ENST00000442151 POFUT2Q9Y2G5 429 aa6.8□□□□□ -1.32
CD44-211ENST00000442151 ZC3H12DA2A288 527 aaKnown RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 TMEM229AB2RXF0 380 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 NPIPB7O75200 414 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 BCAS1O75363 584 aaPredicted RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 MT-ATP6P00846 226 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 HIST1H2ABP04908 130 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 ARAFP10398 606 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 NQO1P15559 274 aaKnown RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 MAP2K3P46734 347 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 CLDN17P56750 224 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 VLDLRP98155 873 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 ROR2Q01974 943 aaKnown RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 SQLEQ14534 574 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 EFNB3Q15768 340 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 ALG10BQ5I7T1 473 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 LRIF1Q5T3J3 769 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 INTS11Q5TA45 600 aaKnown RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 HIST3H2AQ7L7L0 130 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 SLC46A3Q7Z3Q1 461 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 DPPA2Q7Z7J5 298 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 HMGN2P46Q86SG4 172 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 ZIC4Q8N9L1 334 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 HIPK4Q8NE63 616 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 BCL2L2Q92843 193 aaPredicted RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 HIST1H2ACQ93077 130 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 FBXO17Q96EF6 278 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 DNAJA3Q96EY1 480 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 ZNF385AQ96PM9 386 aaKnown RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 BEX2Q9BXY8 128 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 PAIP1Q9H074 479 aaKnown RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 SHARPINQ9H0F6 387 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 CRNNQ9UBG3 495 aaPredicted RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 GPR160Q9UJ42 338 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 LEF1Q9UJU2 399 aaPredicted RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 GDF2Q9UK05 429 aaPredicted RBP6.79□□□□□ -1.32
CD44-211ENST00000442151 NOX1Q9Y5S8 564 aa6.79□□□□□ -1.32
CD44-211ENST00000442151 ACANP16112 2415 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 ABCA2Q9BZC7 2435 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 SLC22A23A1A5C7 686 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 FMO6PO60774 539 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 LGI1O95970 557 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 PTHP01270 115 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 FAM157CP0CG43 387 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 GATA4P43694 442 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 RPS5P46782 204 aaKnown RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 MVDP53602 400 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 RGS8P57771 180 aaPredicted RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 SELENOVP59797 346 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 RPS23P62266 143 aaKnown RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 BNIP2Q12982 314 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 PMS2P3Q13401 168 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 MOGQ16653 247 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 TRMT5Q32P41 509 aaKnown RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 ZNF613Q6PF04 617 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 HDDC2Q7Z4H3 204 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 SERPINA11Q86U17 422 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 ARMC8Q8IUR7 673 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 EPHX4Q8IUS5 362 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 C10orf53Q8N6V4 93 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 C11orf65Q8NCR3 313 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 NUP37Q8NFH4 326 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 SLC26A7Q8TE54 656 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 C10orf105Q8TEF2 133 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 VPS33AQ96AX1 596 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 OR52B2Q96RD2 323 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 TMEM43Q9BTV4 400 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 ZNF442Q9H7R0 627 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 ARGLU1Q9NWB6 273 aaPredicted RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 CCDC167Q9P0B6 97 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 KCNS2Q9ULS6 477 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 MOKQ9UQ07 419 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 NDUFAF1Q9Y375 327 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 HIVEP2P31629 2446 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 A0A087WUJ7 227 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 A0A1W2PR80 420 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 HTR3EA5X5Y0 456 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 ANGPT2O15123 496 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 FZD7O75084 574 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 IFNA14P01570 189 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 GPX2P18283 190 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 NPR2P20594 1047 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 EDNRAP25101 427 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 IFNA8P32881 189 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 NTF4P34130 210 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 EVX1P49640 407 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 SELENOPP49908 381 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 IDH3AP50213 366 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 PPOXP50336 477 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms