RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 MGARPQ8TDB4 240 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 ZNF385AQ96PM9 386 aaKnown RBP6.77□□□□□ -1.33
VPS50-204ENST00000438395 RAB1BQ9H0U4 201 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 RAD21L1Q9H4I0 556 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 WDR55Q9H6Y2 383 aaPredicted RBP6.77□□□□□ -1.33
VPS50-204ENST00000438395 NPHS2Q9NP85 383 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 CA10Q9NS85 328 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 PNPOQ9NVS9 261 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 NKIRAS1Q9NYS0 192 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.77□□□□□ -1.33
VPS50-204ENST00000438395 HAO1Q9UJM8 370 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 SLC13A4Q9UKG4 626 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 RCE1Q9Y256 329 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 IFT52Q9Y366 437 aa6.77□□□□□ -1.33
VPS50-204ENST00000438395 V9GYY5 206 aaPredicted RBP6.77□□□□□ -1.33
VPS50-204ENST00000438395 A0A096LNT2 108 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 IGHV1-18A0A0C4DH31 117 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 A0A0G2JPF8 293 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 PRAMEF27A3QJZ7 478 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 HNRNPCL2B2RXH8 293 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 HNRNPCL3B7ZW38 293 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 UBDO15205 165 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 HNRNPCL1O60812 293 aaKnown RBP6.76□□□□□ -1.33
VPS50-204ENST00000438395 SLC43A1O75387 559 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 ALDOCP09972 364 aaKnown RBP6.76□□□□□ -1.33
VPS50-204ENST00000438395 TFPTP0C1Z6 253 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 OR4A8P0C604 315 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 HNRNPCL4P0DMR1 293 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 IGHV4-31P0DP07 118 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 ETFAP13804 333 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 LSP1P33241 339 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 NR4A2P43354 598 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 SELENOPP49908 381 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 IDH3GP51553 393 aaPredicted RBP6.76□□□□□ -1.33
VPS50-204ENST00000438395 CLDN17P56750 224 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 ROR2Q01974 943 aaKnown RBP6.76□□□□□ -1.33
VPS50-204ENST00000438395 NAAAQ02083 359 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 NPRL3Q12980 569 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 BNIP2Q12982 314 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 PDCD4Q53EL6 469 aaKnown RBP6.76□□□□□ -1.33
VPS50-204ENST00000438395 ZNF311Q5JNZ3 666 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 RPS26P11Q5JNZ5 115 aaPredicted RBP6.76□□□□□ -1.33
VPS50-204ENST00000438395 LIPNQ5VXI9 398 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 CDPF1Q6NVV7 123 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 C5orf46Q6UWT4 87 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 MSANTD1Q6ZTZ1 278 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 ANKS4BQ8N8V4 417 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 PIK3C3Q8NEB9 887 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 STK35Q8TDR2 534 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 FBLIM1Q8WUP2 373 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 SLC38A5Q8WUX1 472 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 TMEM19Q96HH6 336 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 TEX37Q96LM6 180 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 ANKRD27Q96NW4 1050 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 SORCS2Q96PQ0 1159 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 SPATA9Q9BWV2 254 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 C20orf27Q9GZN8 174 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 TPT1P8Q9HAU6 139 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 B3GAT2Q9NPZ5 323 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 THAP1Q9NVV9 213 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 PCDHB14Q9Y5E9 798 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 NOX1Q9Y5S8 564 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 GPR45Q9Y5Y3 372 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 DSPPQ9NZW4 1301 aa6.76□□□□□ -1.33
VPS50-204ENST00000438395 ARPC4-TTLL3A0A0A6YYG9 625 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 TMEM120BA0PK00 339 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 hCG_2039718K7EN88 272 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 AIM2O14862 343 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 OR2T1O43869 369 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 TGFAP01135 160 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 VIMP08670 466 aaKnown RBP6.75□□□□□ -1.33
VPS50-204ENST00000438395 CECR9P0C854 216 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 ZCCHC18P0CG32 403 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 PNMTP11086 282 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 NQO1P15559 274 aaKnown RBP6.75□□□□□ -1.33
VPS50-204ENST00000438395 NPR2P20594 1047 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 PCMT1P22061 227 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 IGFBP5P24593 272 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 ARR3P36575 388 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 SRP14P37108 136 aaKnown RBP6.75□□□□□ -1.33
VPS50-204ENST00000438395 RPS5P46782 204 aaKnown RBP6.75□□□□□ -1.33
VPS50-204ENST00000438395 PPOXP50336 477 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 POLR2JP52435 117 aaKnown RBP6.75□□□□□ -1.33
VPS50-204ENST00000438395 CHN2P52757 468 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 TUBA1BP68363 451 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 TUBA4AP68366 448 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 ARF1P84077 181 aaKnown RBP6.75□□□□□ -1.33
VPS50-204ENST00000438395 SQLEQ14534 574 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 ADIPOQQ15848 244 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 FAM120AOSQ5T036 256 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 CREB3L2Q70SY1 520 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 TUBA1AQ71U36 451 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 SPATA21Q7Z572 469 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 SERPINA11Q86U17 422 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 SNX32Q86XE0 403 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 CCDC36Q8IYA8 594 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 MIER2Q8N344 545 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 C10orf53Q8N6V4 93 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 ZIC4Q8N9L1 334 aa6.75□□□□□ -1.33
VPS50-204ENST00000438395 MFSD8Q8NHS3 518 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms