RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LOC102725191A0A1B0GVB3 256 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 A0A1W2PNV4 684 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 CD8B2A6NJW9 211 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 OR6C65A6NJZ3 312 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 SNTNA6NMZ2 147 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 RIIAD1A6NNX1 92 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 B8ZZF3 427 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 LRRN3E7EW58 273 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 H0YC42 278 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 CDC42EP2O14613 210 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 CYTIPO60759 359 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 RENP00797 406 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 F13BP05160 661 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 CD14P08571 375 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 ZNF3P17036 446 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 GUCA1AP43080 201 aaPredicted RBP9.03□□□□□ -0.96
CD44-207ENST00000425428 MYBPC1Q00872 1141 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 ITGADQ13349 1161 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 ZIK1Q3SY52 487 aaPredicted RBP9.03□□□□□ -0.96
CD44-207ENST00000425428 PRR30Q53SZ7 412 aaPredicted RBP9.03□□□□□ -0.96
CD44-207ENST00000425428 CLEC12AQ5QGZ9 265 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 NSUN5P2Q63ZY6 315 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 MTFR2Q6P444 385 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 PCSK4Q6UW60 755 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 EPHX4Q8IUS5 362 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 FNDC9Q8TBE3 224 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 FNDC8Q8TC99 324 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 ROBO4Q8WZ75 1007 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 ZNF845Q96IR2 970 aaPredicted RBP9.03□□□□□ -0.96
CD44-207ENST00000425428 SAMD8Q96LT4 415 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 ERMAPQ96PL5 475 aaPredicted RBP9.03□□□□□ -0.96
CD44-207ENST00000425428 SRXN1Q9BYN0 137 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 H2AFY2Q9P0M6 372 aaPredicted RBP9.03□□□□□ -0.96
CD44-207ENST00000425428 KLHL13Q9P2N7 655 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 KLHL21Q9UJP4 597 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 NOSIPQ9Y314 301 aaKnown RBP9.03□□□□□ -0.96
CD44-207ENST00000425428 GMPPBQ9Y5P6 360 aa9.03□□□□□ -0.96
CD44-207ENST00000425428 IGHV3-15A0A0B4J1V0 119 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 IMPA2O14732 288 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 KLF4O43474 513 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 MPZL2O60487 215 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 PTP4A3O75365 173 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 MRPL33O75394 65 aaKnown RBP9.02□□□□□ -0.97
CD44-207ENST00000425428 WISP1O95388 367 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 YES1P07947 543 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 APEHP13798 732 aaKnown RBP9.02□□□□□ -0.97
CD44-207ENST00000425428 UQCRC1P31930 480 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 RPS4XP62701 263 aaKnown RBP9.02□□□□□ -0.97
CD44-207ENST00000425428 LSM11P83369 360 aaKnown RBP eCLIP9.02□□□□□ -0.97
CD44-207ENST00000425428 H3F3AP84243 136 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 LTBQ06643 244 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 TOP3AQ13472 1001 aaPredicted RBP9.02□□□□□ -0.97
CD44-207ENST00000425428 POU4F3Q15319 338 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 ACSF3Q4G176 576 aaPredicted RBP9.02□□□□□ -0.97
CD44-207ENST00000425428 IZUMO2Q6UXV1 221 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 SLC35D2Q76EJ3 337 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 ABHD12BQ7Z5M8 362 aaPredicted RBP9.02□□□□□ -0.97
CD44-207ENST00000425428 CCDC103Q8IW40 242 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 ZNF100Q8IYN0 542 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 GALNT11Q8NCW6 608 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 OR9K2Q8NGE7 335 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 GMPPAQ96IJ6 420 aaPredicted RBP9.02□□□□□ -0.97
CD44-207ENST00000425428 UCN2Q96RP3 112 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 SLC29A1Q99808 456 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 KATNB1Q9BVA0 655 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 GABARAPL3Q9BY60 117 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 TXNIPQ9H3M7 391 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 TOR3AQ9H497 397 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 EGLN3Q9H6Z9 239 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 RNF122Q9H9V4 155 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 MCCC2Q9HCC0 563 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 TAS2R5Q9NYW4 299 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 SH3BGRL2Q9UJC5 107 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 ATMQ13315 3056 aa9.02□□□□□ -0.97
CD44-207ENST00000425428 PHF3Q92576 2039 aaKnown RBP9.02□□□□□ -0.97
CD44-207ENST00000425428 A0A1B0GUH1 482 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 LOC100130705A0A1B0GUX0 176 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 NPIPB13A6NJU9 1138 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 ZNF724A8MTY0 619 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 NPIPB4C9JG80 1138 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 H0YAE9 185 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 SMAD9O15198 467 aaKnown RBP9.01□□□□□ -0.97
CD44-207ENST00000425428 SLC43A1O75387 559 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 IGHG1P01857 330 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 CRHP06850 196 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 ZNF26P17031 533 aaPredicted RBP9.01□□□□□ -0.97
CD44-207ENST00000425428 FUT4P22083 530 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 SDHAP31040 664 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 GRK5P34947 590 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 TIMP3P35625 211 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 ACVR1BP36896 505 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 GIPRP48546 466 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 CLDN17P56750 224 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 CLRN1P58418 232 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 RPL27P61353 136 aaKnown RBP9.01□□□□□ -0.97
CD44-207ENST00000425428 C19orf57Q0VDD7 668 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 IL18R1Q13478 541 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 GINS1Q14691 196 aa9.01□□□□□ -0.97
CD44-207ENST00000425428 PTGES3Q15185 160 aaKnown RBP9.01□□□□□ -0.97
CD44-207ENST00000425428 SNAPC1Q16533 368 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms