RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 OR4K13Q8NH42 304 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 ARSGQ96EG1 525 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 VRK1Q99986 396 aaPredicted RBP9.79□□□□□ -0.84
USP54-204ENST00000422491 ZNF471Q9BX82 626 aaPredicted RBP9.79□□□□□ -0.84
USP54-204ENST00000422491 POFUT1Q9H488 388 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 SYNPO2LQ9H987 977 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 MYEF2Q9P2K5 600 aaKnown RBP9.79□□□□□ -0.84
USP54-204ENST00000422491 CHRNA9Q9UGM1 479 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 KCNE5Q9UJ90 142 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 MKL2Q9ULH7 1088 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 EDARQ9UNE0 448 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 LHX6Q9UPM6 363 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 CCL26Q9Y258 94 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 HTTP42858 3142 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 SYNDIG1LA6NDD5 238 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 HOXA2O43364 376 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 AKR7A3O95154 331 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 PMS2P2O95744 297 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 AGR2O95994 175 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 ACTL6AO96019 429 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 SOD2P04179 222 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 OR4E1P0C645 316 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 SLC25A4P12235 298 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 GTF2F2P13984 249 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 SLC6A6P31641 620 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 ST8SIA6P61647 398 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 AVPI1Q5T686 147 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 YOD1Q5VVQ6 348 aaPredicted RBP9.79□□□□□ -0.84
USP54-204ENST00000422491 C11orf87Q6NUJ2 197 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 OR5M8Q8NGP6 311 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 THAP6Q8TBB0 222 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 NANPQ8TBE9 248 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 EDAQ92838 391 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 ZNF350Q9GZX5 532 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 TLNRD1Q9H1K6 362 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 TCF7L1Q9HCS4 588 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 ZFP57Q9NU63 452 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 ASF1BQ9NVP2 202 aa9.79□□□□□ -0.84
USP54-204ENST00000422491 ZNF629Q9UEG4 869 aaPredicted RBP9.79□□□□□ -0.84
USP54-204ENST00000422491 GGT3PA6NGU5 568 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 FAM25EA8MYX2 175 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 PSMD9O00233 223 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 VEGFDO43915 354 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 SNAPINO95295 136 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 CD3DP04234 171 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 HEXAP06865 529 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 FABP1P07148 127 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 NID1P14543 1247 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 EPCAMP16422 314 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 DIO1P49895 249 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 NR0B1P51843 470 aaKnown RBP9.78□□□□□ -0.84
USP54-204ENST00000422491 FKBP1BP68106 108 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 PLAURQ03405 335 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 PRDX1Q06830 199 aaKnown RBP9.78□□□□□ -0.84
USP54-204ENST00000422491 ZNF813Q6ZN06 617 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 AMZ2Q86W34 360 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 TMPRSS12Q86WS5 348 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 SLC35F3Q8IY50 421 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 CLEC1AQ8NC01 280 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 STEAP2Q8NFT2 490 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 OR2L5Q8NG80 312 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 RXFP4Q8TDU9 374 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 LRFN5Q96NI6 719 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 ABT1Q9ULW3 272 aaKnown RBP9.78□□□□□ -0.84
USP54-204ENST00000422491 ZNF780BQ9Y6R6 833 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 TRAV20A0A0B4J274 112 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.78□□□□□ -0.84
USP54-204ENST00000422491 OR6C76A6NM76 312 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 SULT1C2O00338 296 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 FGF16O43320 207 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 NGFRP08138 427 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 LAMP2P13473 410 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 NPBWR1P48145 328 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 TEAD2Q15562 447 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 BEX5Q5H9J7 111 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 ZNF684Q5T5D7 378 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 C9orf131Q5VYM1 1079 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 H3F3CQ6NXT2 135 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 ANKRD16Q6P6B7 361 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 ZNF765Q7L2R6 523 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 BIVMQ86UB2 503 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 ZFP82Q8N141 532 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 ZNF619Q8N2I2 560 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 OR2A1Q8NGT9 310 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 SLC46A2Q9BY10 475 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 SFXN1Q9H9B4 322 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 GSN-AS1Q9NRJ2 163 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 C14orf105Q9NVL8 296 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 SPHK1Q9NYA1 384 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 TINAGQ9UJW2 476 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 A0A0C4DFX4 3053 aa9.78□□□□□ -0.84
USP54-204ENST00000422491 A0A1W2PRU2 124 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 OR14I1A6ND48 311 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 MEIS3P1A6NDR6 274 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 PEX12O00623 359 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 RAD1O60671 282 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 RNGTTO60942 597 aaKnown RBP9.77□□□□□ -0.84
USP54-204ENST00000422491 CTAG2O75638 210 aa9.77□□□□□ -0.84
USP54-204ENST00000422491 F12P00748 615 aaPredicted RBP9.77□□□□□ -0.84
USP54-204ENST00000422491 DBIP07108 87 aaKnown RBP9.77□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms