RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 C3orf49Q96BT1 292 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 RNF31Q96EP0 1072 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 C4orf36Q96KX1 117 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 NEDD4LQ96PU5 975 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 TBX5Q99593 518 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 C12orf10Q9HB07 376 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 APMAPQ9HDC9 416 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 UBQLN4Q9NRR5 601 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 NPFFR2Q9Y5X5 522 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 NUP210LQ5VU65 1888 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 TRAV1-2A0A0B4J238 106 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 C2orf92A0A1B0GVN3 265 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 MEIOCA2RUB1 952 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 SMIM30A4D0T7 59 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 SYNDIG1LA6NDD5 238 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 TMEM150CB9EJG8 249 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 J3QLW9 94 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 IMPA2O14732 288 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 RAD1O60671 282 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 TMEM127O75204 238 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 TRIM3O75382 744 aaPredicted RBP13.48□□□□□ -0.25
USP4-203ENST00000415188 LIFP15018 202 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 ZNF19P17023 458 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 MAOAP21397 527 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 TALDO1P37837 337 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 DIO1P49895 249 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 PGDP52209 483 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 GBX2P52951 348 aaPredicted RBP13.48□□□□□ -0.25
USP4-203ENST00000415188 MC2RQ01718 297 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 IL18Q14116 193 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 PON3Q15166 354 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 TBR1Q16650 682 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 CDONQ4KMG0 1287 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 IL22RA1Q8N6P7 574 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 ZSCAN1Q8NBB4 408 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 OR6F1Q8NGZ6 308 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 ABHD4Q8TB40 342 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 HAVCR2Q8TDQ0 301 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 RNF121Q9H920 327 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 CYSLTR2Q9NS75 346 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 RBFOX1Q9NWB1 397 aaKnown RBP13.48□□□□□ -0.25
USP4-203ENST00000415188 ST6GALNAC2Q9UJ37 374 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 IER3IP1Q9Y5U9 82 aa13.48□□□□□ -0.25
USP4-203ENST00000415188 C17orf105B2RV13 164 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 FAM25AB3EWG3 89 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 FAM25CB3EWG5 89 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 FAM25GB3EWG6 89 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 B8ZZF3 427 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 PYCARD-AS1I3L0S3 204 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 PLA2G10O15496 165 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 CDC123O75794 336 aaPredicted RBP13.47□□□□□ -0.25
USP4-203ENST00000415188 GATBO75879 557 aaKnown RBP13.47□□□□□ -0.25
USP4-203ENST00000415188 NCR1O76036 304 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 ITGB2P05107 769 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 MRPL3P09001 348 aaKnown RBP13.47□□□□□ -0.25
USP4-203ENST00000415188 FAM87AP0C7U9 286 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 HIST1H1CP16403 213 aaKnown RBP13.47□□□□□ -0.25
USP4-203ENST00000415188 APEX1P27695 318 aaKnown RBP13.47□□□□□ -0.25
USP4-203ENST00000415188 HLA-DMAP28067 261 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 RORAP35398 523 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 SLC25A1P53007 311 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 DCAF7P61962 342 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 CCDC58Q4VC31 144 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 RPL22L1Q6P5R6 122 aaKnown RBP13.47□□□□□ -0.25
USP4-203ENST00000415188 TRILQ7L0X0 811 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 SLC35F2Q8IXU6 374 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 CYB561A3Q8NBI2 242 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 DUSP18Q8NEJ0 188 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 OR14A16Q8NHC5 309 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 SENP5Q96HI0 755 aaPredicted RBP13.47□□□□□ -0.25
USP4-203ENST00000415188 ART5Q96L15 291 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 PGLYRP3Q96LB9 341 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 FRMD6Q96NE9 622 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 TGM7Q96PF1 710 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 NMNAT2Q9BZQ4 307 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 NRIP3Q9NQ35 241 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 LANCL2Q9NS86 450 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 RABL2AQ9UBK7 228 aaPredicted RBP13.47□□□□□ -0.25
USP4-203ENST00000415188 RABL2BQ9UNT1 228 aa13.47□□□□□ -0.25
USP4-203ENST00000415188 FRG2CA6NGY1 282 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 ELOA3DA6NLF2 546 aaPredicted RBP13.46□□□□□ -0.25
USP4-203ENST00000415188 B4DXG7 233 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 MCIDASD6RGH6 385 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 E9PI62 339 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 GPRIN2O60269 458 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 ARL6IP5O75915 188 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 CLUP10909 449 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 UBL4AP11441 157 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 NPR2P20594 1047 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 RPL4P36578 427 aaKnown RBP13.46□□□□□ -0.25
USP4-203ENST00000415188 SLC6A8P48029 635 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 OR12D2P58182 307 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 ERV3-1Q14264 604 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 CDK5R1Q15078 307 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 CARTPTQ16568 116 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 ELOA3BQ3SY89 546 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 IDNKQ5T6J7 187 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 FCRLBQ6BAA4 426 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 SFXN4Q6P4A7 337 aa13.46□□□□□ -0.25
USP4-203ENST00000415188 PLET1Q6UQ28 207 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms