RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 FAM221BA6H8Z2 402 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 RLN1P04808 185 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 UCHL1P09936 223 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 LTBQ06643 244 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 FGFBP1Q14512 234 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 CDK10Q15131 360 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 CORO6Q6QEF8 472 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 LINC00346Q8IVM7 164 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 NUDT9Q9BW91 350 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 CHRNA9Q9UGM1 479 aa12.2□□□□□ -0.46
VPS54-203ENST00000409558 MUC22E2RYF6 1773 aaPredicted RBP12.2□□□□□ -0.46
VPS54-203ENST00000409558 A0A087WUJ7 227 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 XKRYO14609 159 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 ZNF264O43296 627 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 GMDSO60547 372 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 SLC16A7O60669 478 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 LIPCP11150 499 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 EPXP11678 715 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 SRMP19623 302 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 RPS4Y1P22090 263 aaKnown RBP12.19□□□□□ -0.46
VPS54-203ENST00000409558 NRG3P56975 720 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 SLC2A12Q8TD20 617 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 EMC6Q9BV81 110 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 IRF2BPLQ9H1B7 796 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 C8orf33Q9H7E9 229 aaPredicted RBP12.19□□□□□ -0.46
VPS54-203ENST00000409558 ANXA2P2A6NMY6 339 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 SLC19A2O60779 497 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 ANXA2P07355 339 aaKnown RBP12.19□□□□□ -0.46
VPS54-203ENST00000409558 IL11P20809 199 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 PTPMT1Q8WUK0 201 aaPredicted RBP12.19□□□□□ -0.46
VPS54-203ENST00000409558 DVL3Q92997 716 aaPredicted RBP12.19□□□□□ -0.46
VPS54-203ENST00000409558 RNF170Q96K19 258 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 CDV3Q9UKY7 258 aaKnown RBP12.19□□□□□ -0.46
VPS54-203ENST00000409558 PLCL2Q9UPR0 1127 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 RNF215Q9Y6U7 377 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 RP1L1Q8IWN7 2480 aaPredicted RBP12.19□□□□□ -0.46
VPS54-203ENST00000409558 PLPP2O43688 288 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 DHFRP00374 187 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 AK1P00568 194 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 OR10K2Q6IF99 312 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 OR6V1Q8N148 313 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 PLPP7Q8NBV4 271 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 OR52I2Q8NH67 350 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 AKAP1Q92667 903 aaKnown RBP eCLIP12.19□□□□□ -0.46
VPS54-203ENST00000409558 UBQLN4Q9NRR5 601 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 CYSLTR2Q9NS75 346 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 EIF3KQ9UBQ5 218 aaKnown RBP12.19□□□□□ -0.46
VPS54-203ENST00000409558 ZNF337Q9Y3M9 751 aa12.19□□□□□ -0.46
VPS54-203ENST00000409558 IGHV1OR15-9A0A0B4J2B8 117 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 ZNF749O43361 778 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 OR7A10O76100 309 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 AKR7A3O95154 331 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 BCKDHBP21953 392 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 GDNFP39905 211 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 SKP1P63208 163 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 SLC6A19Q695T7 634 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 GKN2Q86XP6 184 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 PIAS4Q8N2W9 510 aaPredicted RBP12.18□□□□□ -0.46
VPS54-203ENST00000409558 SDR16C5Q8N3Y7 309 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 SYNPRQ8TBG9 265 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 TMEM106AQ96A25 262 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 TCTN2Q96GX1 697 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 SEC22CQ9BRL7 303 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 NTMQ9P121 344 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 MGAT4AQ9UM21 535 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 EP300Q09472 2414 aaPredicted RBP12.18□□□□□ -0.46
VPS54-203ENST00000409558 PHF3Q92576 2039 aaKnown RBP12.18□□□□□ -0.46
VPS54-203ENST00000409558 IGKV1D-42A0A075B6H8 117 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 DCDC2BA2VCK2 349 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 PIN1P1O15428 100 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 THBS2P35442 1172 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 RRAS2P62070 204 aaPredicted RBP12.18□□□□□ -0.46
VPS54-203ENST00000409558 FAPQ12884 760 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 LRFN4Q6PJG9 635 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 TOR1AIP2Q8NFQ8 470 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 SMIM19Q96E16 107 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 ST6GALNAC2Q9UJ37 374 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 FRYQ5TBA9 3013 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 ARL6IP5O75915 188 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 VEGFCP49767 419 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 FHL1Q13642 323 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 INPP5JQ15735 1006 aaPredicted RBP12.18□□□□□ -0.46
VPS54-203ENST00000409558 RNLSQ5VYX0 342 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 DMKNQ6E0U4 476 aaPredicted RBP12.18□□□□□ -0.46
VPS54-203ENST00000409558 RPL13AP3Q6NVV1 102 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 ZNF595Q8IYB9 648 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 ZNF687Q8N1G0 1237 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 ZNF527Q8NB42 609 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 GIMAP1Q8WWP7 306 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 DUSP15Q9H1R2 295 aaPredicted RBP12.18□□□□□ -0.46
VPS54-203ENST00000409558 FBRSQ9HAH7 460 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 PCDHGB7Q9Y5F8 929 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 TCRBP04435 133 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 GPLD1P80108 840 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 ZNF117Q03924 483 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 MAB21L1Q13394 359 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 PRTGQ2VWP7 1150 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 TMEM255AQ5JRV8 349 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 OR8H3Q8N146 312 aa12.18□□□□□ -0.46
VPS54-203ENST00000409558 SIX5Q8N196 739 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms