RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ZNF440Q8IYI8 595 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 Q8NA96 180 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 OR52L1Q8NGH7 329 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 OR5W2Q8NH69 310 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 ARSGQ96EG1 525 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 TAAR6Q96RI8 345 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 UBL7Q96S82 380 aaPredicted RBP12.12□□□□□ -0.47
LIMS1-204ENST00000409441 KLHDC3Q9BQ90 382 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 JAM3Q9BX67 310 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 PTGES2Q9H7Z7 377 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 EXOSC3Q9NQT5 275 aaKnown RBP12.12□□□□□ -0.47
LIMS1-204ENST00000409441 EXOGQ9Y2C4 368 aaKnown RBP12.12□□□□□ -0.47
LIMS1-204ENST00000409441 MED31Q9Y3C7 131 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 PEX16Q9Y5Y5 336 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 NBEAQ8NFP9 2946 aa12.12□□□□□ -0.47
LIMS1-204ENST00000409441 A0A0B4J2E0 115 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 A0A1B0GX12 115 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 FAM166BA8MTA8 275 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 CDC42EP2O14613 210 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 ADAM11O75078 769 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 GPX5O75715 221 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 NTN1O95631 604 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 NUDT14O95848 222 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 IFI30P13284 250 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 CPEP16870 476 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 HTR1FP30939 366 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 S100A5P33763 92 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 ACAA2P42765 397 aaKnown RBP12.11□□□□□ -0.47
LIMS1-204ENST00000409441 ETV1P50549 477 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 CCR4P51679 360 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 PPP5CP53041 499 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 TOMM20Q15388 145 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 CLEC12AQ5QGZ9 265 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 ARMC4Q5T2S8 1044 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 WDR88Q6ZMY6 472 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 SLC22A16Q86VW1 577 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 CENPSQ8N2Z9 138 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 LSMEM1Q8N8F7 131 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 FANK1Q8TC84 345 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 GPR119Q8TDV5 335 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 SAMD8Q96LT4 415 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 CDADC1Q9BWV3 514 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 OR52D1Q9H346 318 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 UBQLN3Q9H347 655 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 GALNT8Q9NY28 637 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 B4GALT7Q9UBV7 327 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 SSR3Q9UNL2 185 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 BAIAP2Q9UQB8 552 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 hCG_2014768A0A024R1R8 64 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 A0A075B6Q4 140 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 ANKUB1A6NFN9 424 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 ATXN7O15265 892 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-204ENST00000409441 CDC40O60508 579 aaKnown RBP eCLIP12.11□□□□□ -0.47
LIMS1-204ENST00000409441 TRAPPC6AO75865 159 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 OCM2P0CE71 109 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 OCMP0CE72 109 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-204ENST00000409441 BMP7P18075 431 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 DPP4P27487 766 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 GDF1P27539 372 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 CRYBB2P43320 205 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 SUMO3P55854 103 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-204ENST00000409441 DSCR4P56555 118 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-204ENST00000409441 ZNF45Q02386 682 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 CBFBQ13951 182 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 DOC2BQ14184 412 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 ARSKQ6UWY0 536 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 PHC2Q8IXK0 858 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 CISD2Q8N5K1 135 aaKnown RBP12.11□□□□□ -0.47
LIMS1-204ENST00000409441 TMEM251Q8N6I4 163 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 C1GALT1C1Q96EU7 318 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 ZNF426Q9BUY5 554 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 MROQ9BYG7 248 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 H2AFY2Q9P0M6 372 aaPredicted RBP12.11□□□□□ -0.47
LIMS1-204ENST00000409441 GPR52Q9Y2T5 361 aa12.11□□□□□ -0.47
LIMS1-204ENST00000409441 TLN1Q9Y490 2541 aaKnown RBP12.1□□□□□ -0.47
LIMS1-204ENST00000409441 ZNF670-ZNF695F2Z2N8 137 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 ACOT7O00154 380 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 ZIC3O60481 467 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 HCN1O60741 890 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 ZNF24P17028 368 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 PGCP20142 388 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 MAKP20794 623 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 ETV6P41212 452 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 MAGEA5P43359 124 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 SLC6A8P48029 635 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 TPBGQ13641 420 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 SLC10A1Q14973 349 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 TOMM34Q15785 309 aaPredicted RBP12.1□□□□□ -0.47
LIMS1-204ENST00000409441 PAQR6Q6TCH4 344 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 LNX2Q8N448 690 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 LSM14AQ8ND56 463 aaKnown RBP12.1□□□□□ -0.47
LIMS1-204ENST00000409441 PFN4Q8NHR9 129 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 ZNF524Q96C55 264 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 BPIFA2Q96DR5 249 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 HS3ST6Q96QI5 342 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 ASPNQ9BXN1 380 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 DEFB127Q9H1M4 99 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 RNF167Q9H6Y7 350 aa12.1□□□□□ -0.47
LIMS1-204ENST00000409441 ZNF703Q9H7S9 590 aaPredicted RBP12.1□□□□□ -0.47
LIMS1-204ENST00000409441 CRNNQ9UBG3 495 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms