RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 RAP1AP62834 184 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 HSF1Q00613 529 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 CDNFQ49AH0 187 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 BCL2L15Q5TBC7 163 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 PXDC1Q5TGL8 231 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 SLC15A4Q8N697 577 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 RBPMSQ93062 196 aaKnown RBP6.74□□□□□ -1.33
SCN9A-202ENST00000409435 FKBP10Q96AY3 582 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 PIK3IP1Q96FE7 263 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 C1QTNF6Q9BXI9 259 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 MYH6P13533 1939 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 LINC01387J3KSC0 135 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 ABCD4O14678 606 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 FMO6PO60774 539 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 FAM155BO75949 473 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 ATG12O94817 140 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 PAX6P26367 422 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 EXOSC7Q15024 291 aaKnown RBP6.74□□□□□ -1.33
SCN9A-202ENST00000409435 TMEM108Q6UXF1 575 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 ABI3BPQ7Z7G0 1075 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 MTURNQ8N3F0 131 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 PRSS33Q8NF86 280 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 OR52B6Q8NGF0 335 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 OR13C3Q8NGS6 347 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 ANGPTL6Q8NI99 470 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 SAP25Q8TEE9 199 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 OR7D2Q96RA2 312 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 BARX1Q9HBU1 254 aaPredicted RBP6.74□□□□□ -1.33
SCN9A-202ENST00000409435 SERGEFQ9UGK8 458 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 HRH3Q9Y5N1 445 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 H0YAE9 185 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 HCRTR1O43613 425 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 SIX3O95343 332 aaPredicted RBP6.74□□□□□ -1.33
SCN9A-202ENST00000409435 RPS17P08708 135 aaKnown RBP6.74□□□□□ -1.33
SCN9A-202ENST00000409435 FOLR1P15328 257 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 HENMT1Q5T8I9 393 aaKnown RBP6.74□□□□□ -1.33
SCN9A-202ENST00000409435 GLT8D1Q68CQ7 371 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 TP53I13Q8NBR0 393 aaPredicted RBP6.74□□□□□ -1.33
SCN9A-202ENST00000409435 OR10A6Q8NH74 314 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 DNASE2BQ8WZ79 361 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 ST8SIA2Q92186 375 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 TMEM109Q9BVC6 243 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 OR52A5Q9H2C5 316 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 CHODLQ9H9P2 273 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 NPFFR2Q9Y5X5 522 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 NAP1L6A6NFF2 107 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 LYRM1O43325 122 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 PIAS1O75925 651 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 PCGF2P35227 344 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 HADHBP55084 474 aaKnown RBP6.74□□□□□ -1.33
SCN9A-202ENST00000409435 TRA2BP62995 288 aaKnown RBP6.74□□□□□ -1.33
SCN9A-202ENST00000409435 TNFRSF17Q02223 184 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 RNF130Q86XS8 419 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 SERPINA12Q8IW75 414 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 YIPF7Q8N8F6 280 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 TMEM41AQ96HV5 264 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 LRRC3Q9BY71 257 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF696Q9H7X3 374 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 KLHL42Q9P2K6 505 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 USP22Q9UPT9 525 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 TP53TG5Q9Y2B4 290 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 PLXNB2O15031 1838 aa6.74□□□□□ -1.33
SCN9A-202ENST00000409435 CTSLP07711 333 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 FUT4P22083 530 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 IDH3AP50213 366 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 HES1Q14469 280 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 PPA1Q15181 289 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 CEBPEQ15744 281 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 C6orf141Q5SZD1 244 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF662Q6ZS27 426 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 LACC1Q8IV20 430 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 RAB3CQ96E17 227 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 YAE1D1Q9NRH1 226 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 LYRM2Q9NU23 88 aaPredicted RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 C2orf42Q9NWW7 574 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 ERVK13-1Q9NX77 482 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 UGT2A1Q9Y4X1 527 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 FAM171A2A8MVW0 826 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 NUDT19A8MXV4 375 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 OR2J2O76002 312 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 EIF4EP06730 217 aaKnown RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 M6PRP20645 277 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 FKBP2P26885 142 aaKnown RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 CALCRP30988 508 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 SNCAP37840 140 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 TAS2R30P59541 319 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 SUMO1P63165 101 aaKnown RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 CDK6Q00534 326 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 RAB31Q13636 194 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 CMPK2Q5EBM0 449 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 DCAF10Q5QP82 559 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 AGAP6Q5VW22 663 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 ABLIM2Q6H8Q1 611 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 PWWP2BQ6NUJ5 590 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 OR4K1Q8NGD4 311 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 OR2Y1Q8NGV0 311 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 SENP5Q96HI0 755 aaPredicted RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 NARFLQ9H6Q4 476 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 SCPEP1Q9HB40 452 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 NPAP1Q9NZP6 1156 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms