RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 OPRD1P41143 372 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CSKP41240 450 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 KIR3DL2P43630 455 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 TMED10P49755 219 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 GNG10P50151 68 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 SERPINB8P50452 374 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CCR8P51685 355 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 XGP55808 180 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CHRNB3Q05901 458 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 EXOC3L4Q17RC7 722 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 RPEL1Q2QD12 228 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 GTDC1Q4AE62 458 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 WASHC2DQ5SRD0 308 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 FNBP1LQ5T0N5 605 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ADAM5Q6NVV9 412 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 PRMT9Q6P2P2 845 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CLEC18BQ6UXF7 455 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ASCL5Q7RTU5 278 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 FAM89BQ8N5H3 189 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 MS4A15Q8N5U1 240 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CLEC18CQ8NCF0 446 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 C19orf18Q8NEA5 215 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 OR2L8Q8NGY9 312 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 LGALS14Q8TCE9 139 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ESR2Q92731 530 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ISOC2Q96AB3 205 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 APH1AQ96BI3 265 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CCDC127Q96BQ5 260 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CXorf40BQ96DE9 158 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 RTP4Q96DX8 246 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 DUS3LQ96G46 650 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CLCC1Q96S66 551 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 MEIS3Q99687 375 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CSTL1Q9H114 145 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 GLIPR2Q9H4G4 154 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 UBE2TQ9NPD8 197 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 FZD3Q9NPG1 666 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 NDE1Q9NXR1 346 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 NXT1Q9UKK6 140 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 FADS3Q9Y5Q0 445 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 FANCAO15360 1455 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ATP10BO94823 1461 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ZMYM4Q5VZL5 1548 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 NPIPA5A0A0B4J1W7 369 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 BCLAF3A2AJT9 711 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 NKX6-3A6NJ46 265 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 NPIPA5E9PKD4 350 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 DYNC1I1O14576 645 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 TFECO14948 347 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 GPX5O75715 221 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 SC5DO75845 299 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CLDN14O95500 239 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 JCHAINP01591 159 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 FABP1P07148 127 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 PRSS56P0CW18 603 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 PSKH1P11801 424 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 KDELR2P33947 212 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 SLC1A1P43005 524 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CSNK1A1P48729 337 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 RAP1GDS1P52306 607 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 LBX1P52954 281 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 RAB4BP61018 213 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 UBE2MP61081 183 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ATP6V0D1P61421 351 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CDR2Q01850 454 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF33AQ06730 810 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF155Q12901 538 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 PTGR1Q14914 329 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 GABRA6Q16445 453 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 RFTN2Q52LD8 501 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF585BQ52M93 769 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 C2CD6Q53TS8 623 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 MARCH8Q5T0T0 291 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ATP1A1-AS1Q5TC04 95 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 FAHD2BQ6P2I3 314 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CD300LGQ6UXG3 332 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CCDC121Q6ZUS5 278 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 SLC13A5Q86YT5 568 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 FBXL14Q8N1E6 418 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 TPRX1Q8N7U7 411 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ZSCAN4Q8NAM6 433 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CCDC112Q8NEF3 446 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 OR2AP1Q8NGE2 309 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 OR10V1Q8NGI7 309 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 TFGQ92734 400 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 FAHD2AQ96GK7 314 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 RNF170Q96K19 258 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 B3GALT6Q96L58 329 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 C17orf77Q96MU5 243 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 TNFRSF13CQ96RJ3 184 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF251Q9BRH9 671 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 OR51B6Q9H340 312 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 WDR54Q9H977 334 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 NHEJ1Q9H9Q4 299 aaPredicted RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 CUTCQ9NTM9 273 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 RAB23Q9ULC3 237 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 SLC17A4Q9Y2C5 497 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 OARD1Q9Y530 152 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms