RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 IGFBP1P08833 259 aaPredicted RBP12.74□□□□□ -0.37
SKA1-202ENST00000398452 ZNF708P17019 499 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 ZNF3P17036 446 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 ZNF43P17038 809 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 PAICSP22234 425 aaKnown RBP12.74□□□□□ -0.37
SKA1-202ENST00000398452 MYF6P23409 242 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 GRK5P34947 590 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 DAP3P51398 398 aaKnown RBP12.74□□□□□ -0.37
SKA1-202ENST00000398452 CLDN15P56746 228 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 CLDN20P56880 219 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 RPS4XP62701 263 aaKnown RBP12.74□□□□□ -0.37
SKA1-202ENST00000398452 PRR20EP86478 221 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 PRR20CP86479 221 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 PRR20DP86480 221 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 PRR20BP86481 221 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 PRR20AP86496 221 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 RNFT1Q5M7Z0 435 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 ZNF691Q5VV52 312 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 GPR139Q6DWJ6 353 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 VASNQ6EMK4 673 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 Q6ZPB1 254 aaPredicted RBP12.74□□□□□ -0.37
SKA1-202ENST00000398452 GPAT4Q86UL3 456 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 MCEMP1Q8IX19 187 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 IQCF1Q8N6M8 205 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 OR10D3Q8NH80 312 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 MOSPD2Q8NHP6 518 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 Q96MT0 163 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 MUS81Q96NY9 551 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 TAAR6Q96RI8 345 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 PLA2G12AQ9BZM1 189 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 CLN6Q9NWW5 311 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 IER3IP1Q9Y5U9 82 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 LIPGQ9Y5X9 500 aa12.74□□□□□ -0.37
SKA1-202ENST00000398452 PCNX3Q9H6A9 2034 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 TNRC6AQ8NDV7 1962 aaKnown RBP12.73□□□□□ -0.37
SKA1-202ENST00000398452 OR14I1A6ND48 311 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 AQP7P3A6NL99 342 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 IMPA2O14732 288 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 CLIC3O95833 236 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 BCL10O95999 233 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 TP53P04637 393 aaPredicted RBP12.73□□□□□ -0.37
SKA1-202ENST00000398452 F13BP05160 661 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 APEHP13798 732 aaKnown RBP12.73□□□□□ -0.37
SKA1-202ENST00000398452 UQCRC1P31930 480 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 PCYT1AP49585 367 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 LHX2P50458 406 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 CDK5Q00535 292 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 ZP4Q12836 540 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 TOP3AQ13472 1001 aaPredicted RBP12.73□□□□□ -0.37
SKA1-202ENST00000398452 PDK3Q15120 406 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 GXYLT1Q4G148 440 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 EMC4Q5J8M3 183 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 GTF2IRD2BQ6EKJ0 949 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 LIAT1Q6ZQX7 453 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 GTF2IRD2Q86UP8 949 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 GGNQ86UU5 652 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 IGFN1Q86VF2 1251 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 LNX2Q8N448 690 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 TMEM99Q8N816 258 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 OR8D4Q8NGM9 314 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 OR8J1Q8NGP2 316 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 OTULINQ96BN8 352 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 OXGR1Q96P68 337 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 KATNB1Q9BVA0 655 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 RASSF1Q9NS23 344 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 PNPLA3Q9NST1 481 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 NOX1Q9Y5S8 564 aa12.73□□□□□ -0.37
SKA1-202ENST00000398452 A0A1B0GVC2 190 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 ARPC3O15145 178 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 PLGP00747 810 aaPredicted RBP12.72□□□□□ -0.37
SKA1-202ENST00000398452 RENP00797 406 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 FCGR2AP12318 317 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 CPN1P15169 458 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 ACVR2AP27037 513 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 EPHA2P29317 976 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 SUCLG1P53597 346 aaKnown RBP12.72□□□□□ -0.37
SKA1-202ENST00000398452 CLDN18P56856 261 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 ERVK-25P63136 954 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 POU3F1Q03052 451 aaPredicted RBP12.72□□□□□ -0.37
SKA1-202ENST00000398452 SLC35F1Q5T1Q4 408 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 MEDAGQ5VYS4 303 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 FAM205BPQ63HN1 556 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 C12orf73Q69YU5 71 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 ZNF787Q6DD87 383 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 USP51Q70EK9 711 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 P4HA3Q7Z4N8 544 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 PXKQ7Z7A4 578 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 CHERPQ8IWX8 916 aaKnown RBP12.72□□□□□ -0.37
SKA1-202ENST00000398452 MARVELD2Q8N4S9 558 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 CISD2Q8N5K1 135 aaKnown RBP12.72□□□□□ -0.37
SKA1-202ENST00000398452 TCEANCQ8N8B7 351 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 GPR137Q96N19 417 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 GPX7Q96SL4 187 aaPredicted RBP12.72□□□□□ -0.37
SKA1-202ENST00000398452 TIMP4Q99727 224 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 NRIP3Q9NQ35 241 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 TAS2R5Q9NYW4 299 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 BLOC1S6Q9UL45 172 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 NBASA2RRP1 2371 aa12.72□□□□□ -0.37
SKA1-202ENST00000398452 TENM4Q6N022 2769 aa12.71□□□□□ -0.37
SKA1-202ENST00000398452 MYO18BQ8IUG5 2567 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms