RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ACSM1Q08AH1 577 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 GPR19Q15760 415 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 SYPL1Q16563 259 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 TMEM41BQ5BJD5 291 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 FAM26DQ5JW98 314 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 C15orf39Q6ZRI6 1047 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 MED25Q71SY5 747 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 PRSS48Q7RTY5 328 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 SYT9Q86SS6 491 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 YRDCQ86U90 279 aaKnown RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 OR5K2Q8NHB8 316 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 ABHD4Q8TB40 342 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 EMG1Q92979 244 aaKnown RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 ISOC1Q96CN7 298 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 SLC35E1Q96K37 410 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 TRIB1Q96RU8 372 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 AMBRA1Q9C0C7 1298 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 SEMA6CQ9H3T2 930 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 BARX1Q9HBU1 254 aaPredicted RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 TRAV36DV7A0A075B6V5 113 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 H7C1C5 153 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 PRAF2O60831 178 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 FBXO24O75426 580 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 UTS2O95399 124 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 TFPTP0C1Z6 253 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 CPEP16870 476 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 TRHRP34981 398 aaPredicted RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 LCN6P62502 163 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 GABREP78334 506 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 TNFRSF17Q02223 184 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 PEA15Q15121 130 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 PGGHGQ32M88 737 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 Q6ZRG5 221 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 MAML2Q8IZL2 1156 aaPredicted RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 OR5AS1Q8N127 324 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 OR6V1Q8N148 313 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 FRMD1Q8N878 549 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 GJC3Q8NFK1 279 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 BPIFCQ8NFQ6 507 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 OR4M1Q8NGD0 313 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 SPPL3Q8TCT6 385 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 BRIX1Q8TDN6 353 aaKnown RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 TCTEX1D2Q8WW35 142 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 L3HYPDHQ96EM0 354 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 CPPED1Q9BRF8 314 aaPredicted RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 ZNF334Q9HCZ1 680 aaPredicted RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 PUS1Q9Y606 427 aaKnown RBP eCLIP6.67□□□□□ -1.34
UPF2-203ENST00000397053 CITO14578 2027 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 ABCA1O95477 2261 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 SPTBN1Q01082 2364 aaKnown RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 TMEM72A0PK05 275 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 SULT1C2O00338 296 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 ADAM12O43184 909 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 GPRIN2O60269 458 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 CAPNS1P04632 268 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 CHATP28329 748 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 CRMP1Q14194 572 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 GK3PQ14409 553 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 MARCH8Q5T0T0 291 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 HIST2H3PS2Q5TEC6 136 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 MFSD12Q6NUT3 480 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 CYS1Q717R9 158 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 WDTC1Q8N5D0 677 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 KHSRPQ92945 711 aaKnown RBP eCLIP6.67□□□□□ -1.342e-6■■□□□ 13.7
UPF2-203ENST00000397053 CCDC74AQ96AQ1 378 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 COQ10AQ96MF6 247 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 RTL8AQ9BWD3 113 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 HSFX1Q9UBD0 423 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 FBXO4Q9UKT5 387 aa6.67□□□□□ -1.34
UPF2-203ENST00000397053 MRPS28Q9Y2Q9 187 aaKnown RBP6.67□□□□□ -1.34
UPF2-203ENST00000397053 AGAP14A8MT82 685 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 DEGS1O15121 323 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 DOK2O60496 412 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 HLA-AP01891 365 aaKnown RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 HSD17B1P14061 328 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 CSNK1DP48730 415 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 TPMTP51580 245 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SRPXP78539 464 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 RAB40BQ12829 278 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 CPZQ66K79 652 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 CNIH2Q6PI25 160 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 TMEM207Q6UWW9 146 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 B3GLCTQ6Y288 498 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 MEPCEQ7L2J0 689 aaKnown RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 PNPLA1Q8N8W4 532 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 LMNTD1Q8N9Z9 388 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SLC30A3Q99726 388 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 SLC38A1Q9H2H9 487 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 NOX3Q9HBY0 568 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.66□□□□□ -1.34
UPF2-203ENST00000397053 BABAM2Q9NXR7 383 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 LOXL2Q9Y4K0 774 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 E9PCH4 1651 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ANKRD61A6NGH8 418 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 ZNF705GA8MUZ8 300 aaPredicted RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 CTNSO60931 367 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 GOSR1O95249 250 aa6.66□□□□□ -1.34
UPF2-203ENST00000397053 CRYABP02511 175 aaKnown RBP6.66□□□□□ -1.34
UPF2-203ENST00000397053 SELEP16581 610 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms