RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 DAZAP1Q96EP5 407 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 OR5M11Q96RB7 305 aa9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 RALYQ9UKM9 306 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-203ENST00000396595 MYH1P12882 1939 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 D6RAR5 112 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 GALR3O60755 368 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 CSO75390 466 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 SMIM18P0DKX4 95 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 PSMB5P28074 263 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 HOXA9P31269 272 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 OTX2P32243 289 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 GAB1Q13480 694 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 FCN2Q15485 313 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 ABHD17BQ5VST6 288 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 VASNQ6EMK4 673 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 ADAM5Q6NVV9 412 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 GPR155Q7Z3F1 870 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 KLHDC1Q8N7A1 406 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 OR56B1Q8NGI3 324 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 OR5K2Q8NHB8 316 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 NEURL3Q96EH8 262 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 ANKRD19PQ9H560 264 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 TMEM38AQ9H6F2 299 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 A4GALTQ9NPC4 353 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 FAM212BQ9NTI7 297 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 ASIC5Q9NY37 505 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 SPHK1Q9NYA1 384 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 ETV7Q9Y603 341 aa9.52□□□□□ -0.88
LIMCH1-203ENST00000396595 SLC9B1P1A6NJY1 282 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 DRD1P21728 446 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 CPT2P23786 658 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 SHC1P29353 583 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 GPR176Q14439 515 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 Q499Y3 187 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 BEX5Q5H9J7 111 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 RTL10Q7L3V2 364 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 NDUFAF7Q7L592 441 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 OR5M8Q8NGP6 311 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 MARC2Q969Z3 335 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 RASD2Q96D21 266 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 ALG12Q9BV10 488 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 NOX4Q9NPH5 578 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 GDE1Q9NZC3 331 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 NDRG3Q9UGV2 375 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 FBXL2Q9UKC9 423 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 ELAVL4P26378 380 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 RPS19P39019 145 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 TNFRSF17Q02223 184 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 CLINT1Q14677 625 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 ADPRMQ3LIE5 342 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 EXOSC6Q5RKV6 272 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 MARCH8Q5T0T0 291 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 CST9LP1Q5W188 147 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 KDM4DQ6B0I6 523 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 PET117Q6UWS5 81 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 TECTBQ96PL2 329 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 KATNB1Q9BVA0 655 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 SIDT1Q9NXL6 827 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 NUMA1Q14980 2115 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 FBXO24O75426 580 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 ARSAP15289 507 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC9A3R2Q15599 337 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 SOHLH1Q5JUK2 328 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 WDR74Q6RFH5 385 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 C5orf46Q6UWT4 87 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC39A5Q6ZMH5 540 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC43A2Q8N370 569 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 RNF141Q8WVD5 230 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 SLCO5A1Q9H2Y9 848 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 CUTCQ9NTM9 273 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 FBXL4Q9UKA2 621 aa9.52□□□□□ -0.89
LIMCH1-203ENST00000396595 TIAM2Q8IVF5 1701 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 TK1P04183 234 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 BMP1P13497 986 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SERPINA2P20848 420 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 DDOSTP39656 456 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 GABRA2P47869 451 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 COL9A2Q14055 689 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 MSMO1Q15800 293 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 LBHQ53QV2 105 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 C18orf63Q68DL7 685 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC51BQ86UW2 128 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 PGBD5Q8N414 524 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 LKAAEAR1Q8TD35 194 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 CMSS1Q9BQ75 279 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 NIPSNAP3BQ9BS92 247 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SLC46A2Q9BY10 475 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 A0A1W2PPV4 95 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 A6NL46 340 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 KDM4EB2RXH2 506 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 PRICKLE3O43900 615 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 GJB3O75712 270 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 FUCA1P04066 466 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 DBHP09172 617 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 FPR3P25089 353 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 LIPAP38571 399 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 PCBD1P61457 104 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 POU3F1Q03052 451 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 SRYQ05066 204 aa9.51□□□□□ -0.89
LIMCH1-203ENST00000396595 OR52I1Q8NGK6 324 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms