RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 ABHD6Q9BV23 337 aa13□□□□□ -0.33
COL4A3-202ENST00000396578 PPP5D1E7EU14 171 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 TCRBP04435 133 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 TAF9Q16594 264 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 NIT2Q9NQR4 276 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 NECAP2Q9NVZ3 263 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 SLC9B1P1A6NJY1 282 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 SIAH3Q8IW03 269 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 ADGRF3Q8IZF5 1079 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 KDF1Q8NAX2 398 aaPredicted RBP12.99□□□□□ -0.33
COL4A3-202ENST00000396578 SCN11AQ9UI33 1791 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 F13BP05160 661 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 IGFBP1P08833 259 aaPredicted RBP12.99□□□□□ -0.33
COL4A3-202ENST00000396578 CTRB1P17538 263 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 BLVRBP30043 206 aaPredicted RBP12.99□□□□□ -0.33
COL4A3-202ENST00000396578 CTRB2Q6GPI1 263 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 PM20D1Q6GTS8 502 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 TMEM25Q86YD3 366 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 SLC6A18Q96N87 628 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 CAMK2AQ9UQM7 478 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 LOC100289279A0A1B0GTE1 492 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 TIMM8AO60220 97 aaPredicted RBP12.99□□□□□ -0.33
COL4A3-202ENST00000396578 RPL13AP40429 203 aaKnown RBP12.99□□□□□ -0.33
COL4A3-202ENST00000396578 PDE7AQ13946 482 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 MEP1BQ16820 701 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 SLC16A14Q7RTX9 510 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 SCARB1Q8WTV0 552 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 DYNLRB1Q9NP97 96 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 ZNF355PQ9NSJ1 428 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 GNG12Q9UBI6 72 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 CPMP14384 443 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 CR2P20023 1033 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 HIST1H1TP22492 207 aaPredicted RBP12.99□□□□□ -0.33
COL4A3-202ENST00000396578 IVDP26440 423 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 SLC1A3P43003 542 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 C4orf17Q53FE4 359 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 CATSPERDQ86XM0 798 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 SLC22A24Q8N4F4 322 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 NKAIN3Q8N8D7 197 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 CPEB1Q9BZB8 566 aaKnown RBP12.99□□□□□ -0.33
COL4A3-202ENST00000396578 CHRNA9Q9UGM1 479 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 LHX6Q9UPM6 363 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 EMC9Q9Y3B6 208 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 OR5H15A6NDH6 313 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 OR5H14A6NHG9 310 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 OR5H1A6NKK0 313 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 CHRNEQ04844 493 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 GHSRQ92847 366 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 FAM234AQ9H0X4 552 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 ZNF331Q9NQX6 463 aaPredicted RBP12.99□□□□□ -0.33
COL4A3-202ENST00000396578 RYDENQ9NUL5 291 aaKnown RBP12.99□□□□□ -0.33
COL4A3-202ENST00000396578 F2RP25116 425 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 ZNF852Q6ZMS4 543 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 PRICKLE2Q7Z3G6 844 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 RNF175Q8N4F7 328 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 KCNRGQ8N5I3 272 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 ABHD4Q8TB40 342 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 ALG12Q9BV10 488 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 GPR62Q9BZJ7 368 aa12.99□□□□□ -0.33
COL4A3-202ENST00000396578 MRPS28Q9Y2Q9 187 aaKnown RBP12.99□□□□□ -0.33
COL4A3-202ENST00000396578 hCG_1809904A0A1W2PP81 198 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 A0A1W2PPE2 198 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 A0A1W2PR64 198 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 A0A1W2PRV1 198 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 TMEM72A0PK05 275 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 GABRA4P48169 554 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 SMN1Q16637 294 aaKnown RBP12.98□□□□□ -0.33
COL4A3-202ENST00000396578 LIPIQ6XZB0 460 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 SHISA6Q6ZSJ9 500 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 Q6ZSR6 202 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 TMUB2Q71RG4 321 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 OR11L1Q8NGX0 322 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 C20orf24Q9BUV8 137 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 BOKQ9UMX3 212 aaPredicted RBP12.98□□□□□ -0.33
COL4A3-202ENST00000396578 SRPK3Q9UPE1 567 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 PTRH2Q9Y3E5 179 aaKnown RBP12.98□□□□□ -0.33
COL4A3-202ENST00000396578 UGT2A1Q9Y4X1 527 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 ZNF264O43296 627 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 PRAMEF4O60810 478 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 CLDN12P56749 244 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 SLC35A2P78381 396 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 LEXMQ3ZCV2 418 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 OR5M10Q6IEU7 315 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 EID2Q8N6I1 236 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 SFT2D1Q8WV19 159 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 PRELID3BQ9Y3B1 194 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 ABOP16442 354 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 DCAF7P61962 342 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 GTF2H5Q6ZYL4 71 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 CNTN4Q8IWV2 1026 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 HSD17B8Q92506 261 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 APOOQ9BUR5 198 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 PSORS1C1Q9UIG5 152 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.98□□□□□ -0.33
COL4A3-202ENST00000396578 PRSS44E7EML9 344 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 SLC31A2O15432 143 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 SRMP19623 302 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 P2RY2P41231 377 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 ZNF789Q5FWF6 425 aa12.98□□□□□ -0.33
COL4A3-202ENST00000396578 MBOAT2Q6ZWT7 520 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms