RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 SHHQ15465 462 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 C9orf152Q5JTZ5 239 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 C11orf87Q6NUJ2 197 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 GTPBP8Q8N3Z3 284 aaPredicted RBP13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 OR51S1Q8NGJ8 323 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 PAQR8Q8TEZ7 354 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 GTF3AQ92664 365 aaKnown RBP13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 MIB2Q96AX9 1013 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 SLC41A3Q96GZ6 507 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 GAL3ST1Q99999 423 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 ALX4Q9H161 411 aaPredicted RBP13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 CMC2Q9NRP2 79 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 B4GALT6Q9UBX8 382 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 PPIL1Q9Y3C6 166 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 KCNE3Q9Y6H6 103 aa13.44□□□□□ -0.26
VPS9D1-201ENST00000389386 SLC5A10A0PJK1 596 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 UNC119BA6NIH7 251 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 GRM6O15303 877 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 TNRC18O15417 2968 aaPredicted RBP13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 RDH16O75452 317 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 GLSO94925 669 aaPredicted RBP13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 ANXA2P07355 339 aaKnown RBP13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 AGAP20933 346 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 SLC2A5P22732 501 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 BSGP35613 385 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 PBX2P40425 430 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 PDCD1LG2Q9BQ51 273 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 GLIPR2Q9H4G4 154 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 TMEM100Q9NV29 134 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 TRBV2A0A0J9YWF9 115 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 F5H0A9 414 aaPredicted RBP13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 PPP1R3DO95685 299 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 ADH1AP07327 375 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 P2RY4P51582 365 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 ACTC1P68032 377 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 ACTA1P68133 377 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 SRSF4Q08170 494 aaKnown RBP13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 LY6G5CQ5SRR4 150 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 TMEM215Q68D42 235 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 ZNF561Q8N587 486 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 C15orf54Q8N8G6 183 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 F2RL3Q96RI0 385 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 PFDN5Q99471 154 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 UCK1Q9HA47 277 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 SMCO4Q9NRQ5 59 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 FBXL4Q9UKA2 621 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 V9GY05 133 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 DNAH14Q0VDD8 3507 aa13.43□□□□□ -0.26
VPS9D1-201ENST00000389386 A0A1B0GTI1 187 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 WASH3PC4AMC7 463 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 PHYHO14832 338 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 C1orf105O95561 183 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 IGHV2-5P01817 119 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 TMIGD3P0DMS9 266 aaPredicted RBP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 CALCBP10092 127 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 DLSTP36957 453 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 EEF1A1P68104 462 aaKnown RBP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 FOXK2Q01167 660 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 ILF3Q12906 894 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 MLC1Q15049 377 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 TAF13Q15543 124 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 EEF1A1P5Q5VTE0 462 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 DCUN1D3Q8IWE4 304 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 STEAP2Q8NFT2 490 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 OR52L1Q8NGH7 329 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 SPPL3Q8TCT6 385 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 PHYHIPQ92561 330 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 UBE2E3Q969T4 207 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 HIST1H2BAQ96A08 127 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 AMDHD1Q96NU7 426 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 MCHR1Q99705 422 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 FAM83CQ9BQN1 747 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 DPH1Q9BZG8 443 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 EXO5Q9H790 373 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 RCC2Q9P258 522 aaKnown RBP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 NUP210Q8TEM1 1887 aaPredicted RBP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 FAM86C2PA6NEL3 165 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 POM121BA6NF01 834 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 RD3LP0DJH9 198 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 APEHP13798 732 aaKnown RBP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 RCC1P18754 421 aaPredicted RBP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 ITPKBP27987 946 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 SDHAP31040 664 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 PTGER1P34995 402 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 EIF2S3P41091 472 aaKnown RBP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 CASRP41180 1078 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 LASP1Q14847 261 aaKnown RBP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 CDNFQ49AH0 187 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 COL13A1Q5TAT6 717 aaPredicted RBP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 LRRTM1Q86UE6 522 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 SLC2A12Q8TD20 617 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 RAD51AP1Q96B01 352 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 C14orf79Q96F83 325 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 LMLNQ96KR4 655 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 MRPS30Q9NP92 439 aaKnown RBP13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 HAO2Q9NYQ3 351 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 TREM2Q9NZC2 230 aa13.42□□□□□ -0.26
VPS9D1-201ENST00000389386 ACOD1A6NK06 481 aa13.41□□□□□ -0.26
VPS9D1-201ENST00000389386 SULT2B1O00204 365 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms