RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 MAP6Q96JE9 813 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 LCORQ96JN0 433 aaPredicted RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 LRFN5Q96NI6 719 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 SLC25A18Q9H1K4 315 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 TSPAN10Q9H1Z9 355 aaPredicted RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 RGS13O14921 159 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 GLCEO94923 617 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 CD3GP09693 182 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 AHCYP23526 432 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 GBX2P52951 348 aaPredicted RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 ZSWIM7Q19AV6 140 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 POMZP3Q6PJE2 187 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 ELMOD2Q8IZ81 293 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 OR6V1Q8N148 313 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 ASCC1Q8N9N2 400 aaKnown RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 MSANTD3Q96H12 275 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 GFM1Q96RP9 751 aaKnown RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 SLC19A3Q9BZV2 496 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 OR2B2Q9GZK3 357 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 ADAM19Q9H013 955 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 SRA1Q9HD15 236 aaKnown RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 NANSQ9NR45 359 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 EPHA6Q9UF33 1036 aa12.16□□□□□ -0.46
CCDC3-202ENST00000378839 ING1Q9UK53 422 aaPredicted RBP12.16□□□□□ -0.46
CCDC3-202ENST00000378839 TMEM72A0PK05 275 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 TVP23AA6NH52 213 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 RHPN2P1A8MT19 583 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 SCDO00767 359 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 ADAM10O14672 748 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 PIAS2O75928 621 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 ANKRD34CP0C6C1 535 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 ACTA2P62736 377 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 ACTG2P63267 376 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 EBPQ15125 230 aaKnown RBP12.15□□□□□ -0.46
CCDC3-202ENST00000378839 ISXQ2M1V0 245 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 ALG10Q5BKT4 473 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 RPL22L1Q6P5R6 122 aaKnown RBP12.15□□□□□ -0.46
CCDC3-202ENST00000378839 C16orf47Q6ZP98 133 aaPredicted RBP12.15□□□□□ -0.46
CCDC3-202ENST00000378839 SHISA6Q6ZSJ9 500 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 YIPF7Q8N8F6 280 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 SLC46A1Q96NT5 459 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 SNX18Q96RF0 628 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 CHRNA10Q9GZZ6 450 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 RAB33BQ9H082 229 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 MRM2Q9UI43 246 aaKnown RBP12.15□□□□□ -0.46
CCDC3-202ENST00000378839 ADAM30Q9UKF2 790 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 FRG2CA6NGY1 282 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 PCP4L1A6NKN8 68 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 SOX1O00570 391 aaPredicted RBP12.15□□□□□ -0.46
CCDC3-202ENST00000378839 KHNYNO15037 678 aaKnown RBP12.15□□□□□ -0.46
CCDC3-202ENST00000378839 UPK3AO75631 287 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 CD14P08571 375 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 OR8G3PP0DMU2 310 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 PRPS1P60891 318 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 SMAD4Q13485 552 aaKnown RBP12.15□□□□□ -0.46
CCDC3-202ENST00000378839 MZT2BQ6NZ67 158 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 LANCL3Q6ZV70 420 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 TMPRSS9Q7Z410 1059 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 SLITRK4Q8IW52 837 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 TIGD4Q8IY51 512 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 FAM174AQ8TBP5 190 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 GCDHQ92947 438 aaPredicted RBP12.15□□□□□ -0.46
CCDC3-202ENST00000378839 YIPF5Q969M3 257 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 RFT1Q96AA3 541 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 ZDHHC12Q96GR4 267 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 WDR76Q9H967 626 aa12.15□□□□□ -0.46
CCDC3-202ENST00000378839 EXOSC3Q9NQT5 275 aaKnown RBP12.15□□□□□ -0.46
CCDC3-202ENST00000378839 COL6A3P12111 3177 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 TCRBV16S1A1N1A0A5B0 115 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 HPGDP15428 266 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 EVI2BP34910 448 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 RORAP35398 523 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 EFR3AQ14156 821 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 NDUFA5Q16718 116 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 SLC35D3Q5M8T2 416 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 KANSL1Q7Z3B3 1105 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 SLC35F3Q8IY50 421 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 AMELYQ99218 206 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 NPAS1Q99742 590 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 BRD7Q9NPI1 651 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 NPFFR2Q9Y5X5 522 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 CENPXA8MT69 81 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 RPP14O95059 124 aaKnown RBP12.14□□□□□ -0.47
CCDC3-202ENST00000378839 CRYZL1O95825 349 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 ABHD16AO95870 558 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 PNMTP11086 282 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 ARSBP15848 533 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 GRK6P43250 576 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 NR0B1P51843 470 aaKnown RBP12.14□□□□□ -0.47
CCDC3-202ENST00000378839 HSD11B2P80365 405 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 DMWDQ09019 674 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 NOXA1Q86UR1 476 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF440Q8IYI8 595 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 FOXN4Q96NZ1 517 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 TAS2R5Q9NYW4 299 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 FRRS1LQ9P0K9 344 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 RP1P56715 2156 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 IGHV3-20A0A0C4DH32 117 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 TSPAN2O60636 221 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 AKR7A3O95154 331 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms