RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 CPEB2Q7Z5Q1 589 aaKnown RBP13.01□□□□□ -0.33
HMGA1-203ENST00000374116 PLPP5Q8NEB5 264 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 LILRB1Q8NHL6 650 aaPredicted RBP13.01□□□□□ -0.33
HMGA1-203ENST00000374116 ADAMTS18Q8TE60 1221 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 MIXL1Q9H2W2 232 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF160Q9HCG1 818 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF223Q9UK11 482 aaPredicted RBP13.01□□□□□ -0.33
HMGA1-203ENST00000374116 U3KQ87 197 aa13.01□□□□□ -0.33
HMGA1-203ENST00000374116 NBEAQ8NFP9 2946 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 TCRBV16S1A1N1A0A5B0 115 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 ATP6V1G2-DDX39BF2Z307 99 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 HRKO00198 91 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 PEX12O00623 359 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 OR10H2O60403 315 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 HOXD4P09016 255 aaPredicted RBP13□□□□□ -0.33
HMGA1-203ENST00000374116 COX6A1P12074 109 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 PRG2P13727 222 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 HOXB1P14653 301 aaPredicted RBP13□□□□□ -0.33
HMGA1-203ENST00000374116 HTR2AP28223 471 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 TMPRSS3P57727 454 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 PSG6Q00889 435 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF155Q12901 538 aaPredicted RBP13□□□□□ -0.33
HMGA1-203ENST00000374116 GALEQ14376 348 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 PDZK1Q5T2W1 519 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 METAP1DQ6UB28 335 aaPredicted RBP13□□□□□ -0.33
HMGA1-203ENST00000374116 FAM131AQ6UXB0 335 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 MED25Q71SY5 747 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 ZSCAN1Q8NBB4 408 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF680Q8NEM1 530 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 TMEM239Q8WW34 195 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 SLC25A46Q96AG3 418 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 TRMT61AQ96FX7 289 aaKnown RBP13□□□□□ -0.33
HMGA1-203ENST00000374116 WDR77Q9BQA1 342 aaPredicted RBP13□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF559Q9BR84 538 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 EXOGQ9Y2C4 368 aaKnown RBP13□□□□□ -0.33
HMGA1-203ENST00000374116 SPIN1Q9Y657 262 aaPredicted RBP13□□□□□ -0.33
HMGA1-203ENST00000374116 PKD1L2Q7Z442 2459 aa13□□□□□ -0.33
HMGA1-203ENST00000374116 IGHV1-45A0A0A0MS14 117 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 RPS10-NUDT3A0A1W2PQS6 291 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 GXYLT2A0PJZ3 443 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 I3L521 148 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 WWP2O00308 870 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 CDC42EP2O14613 210 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 TOR1AO14656 332 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 ORC5O43913 435 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 SERPINI2O75830 405 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 LYPD3O95274 346 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 CH25HO95992 272 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 GKN3PP0CG01 181 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 LIMS3P0CW19 117 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 LIMS4P0CW20 117 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 ICAM2P13598 275 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 ATF4P18848 351 aaPredicted RBP12.99□□□□□ -0.33
HMGA1-203ENST00000374116 DRD5P21918 477 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 HTR1FP30939 366 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 EMDP50402 254 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 PGDP52209 483 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 SNRPD2P62316 118 aaKnown RBP12.99□□□□□ -0.33
HMGA1-203ENST00000374116 BTG1P62324 171 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 PLAURQ03405 335 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 Q0VFX4 171 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 PCOLCEQ15113 449 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 AANATQ16613 207 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 RPL13AP3Q6NVV1 102 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 FIGNL1Q6PIW4 674 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 PAPD4Q6PIY7 484 aaKnown RBP12.99□□□□□ -0.33
HMGA1-203ENST00000374116 PAMR1Q6UXH9 720 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 CDK20Q8IZL9 346 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF321PQ8N8H1 164 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 OR52R1Q8NGF1 315 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 OR8H1Q8NGG4 311 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 UFD1Q92890 307 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 SAMD8Q96LT4 415 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 SOSTQ9BQB4 213 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 ARHGAP9Q9BRR9 750 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 MED18Q9BUE0 208 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 UBQLN3Q9H347 655 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 TXNL4BQ9NX01 149 aaKnown RBP12.99□□□□□ -0.33
HMGA1-203ENST00000374116 H2AFY2Q9P0M6 372 aaPredicted RBP12.99□□□□□ -0.33
HMGA1-203ENST00000374116 TMEM5Q9Y2B1 443 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 MMACHCQ9Y4U1 282 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 PCDHGB7Q9Y5F8 929 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 FKBP7Q9Y680 259 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 BOD1L1Q8NFC6 3051 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 FABP12A6NFH5 140 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 SCO1O75880 301 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 RAF1P04049 648 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 HK1P19367 917 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 SLC1A3P43003 542 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 MRPL28Q13084 256 aaKnown RBP12.99□□□□□ -0.33
HMGA1-203ENST00000374116 ZNHIT3Q15649 155 aaPredicted RBP12.99□□□□□ -0.33
HMGA1-203ENST00000374116 FLYWCH1Q4VC44 716 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 OR2G6Q5TZ20 316 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 GPR139Q6DWJ6 353 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 ZNF613Q6PF04 617 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 OR52L1Q8NGH7 329 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 GATAD2BQ8WXI9 593 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 AKAP1Q92667 903 aaKnown RBP eCLIP12.99□□□□□ -0.337e-12■■■■□ 24.8
HMGA1-203ENST00000374116 EXTL1Q92935 676 aa12.99□□□□□ -0.33
HMGA1-203ENST00000374116 RBM18Q96H35 190 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms