RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 TRAF3IP2O43734 574 aaPredicted RBP18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 OPN1SWP03999 348 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 CBLP22681 906 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 SH3BGRP55822 239 aaPredicted RBP18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 UBE2NP61088 152 aaKnown RBP18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 MS4A18Q3C1V0 323 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 ANKRD16Q6P6B7 361 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 ZNF613Q6PF04 617 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 PATL1Q86TB9 770 aaKnown RBP18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 SCAIQ8N9R8 606 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 GPR32P1Q8NGA4 272 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 MCHR1Q99705 422 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 TMEM43Q9BTV4 400 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 REG4Q9BYZ8 158 aa18.94■□□□□ 0.62
CCDC28B-201ENST00000373602 IGHV1-18A0A0C4DH31 117 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 ATP6V1G2-DDX39BF2Z307 99 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 AKAP8O43823 692 aaKnown RBP18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 HPRP00739 348 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 HOXB1P14653 301 aaPredicted RBP18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 PCGF2P35227 344 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 GZMMP51124 257 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 NPTX1Q15818 432 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 LINC00114Q6XXX2 140 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 UEVLDQ8IX04 471 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 GPR137CQ8N3F9 429 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 OR6T1Q8NGN1 323 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 OR10A6Q8NH74 314 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 SLC38A2Q96QD8 506 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 OR2M2Q96R28 347 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 ASPNQ9BXN1 380 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 GPR35Q9HC97 309 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 CRNNQ9UBG3 495 aaPredicted RBP18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 MOKQ9UQ07 419 aa18.93■□□□□ 0.62
CCDC28B-201ENST00000373602 TLN2Q9Y4G6 2542 aa18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 A0A096LPE4 126 aa18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 A0A1W2PPZ6 126 aa18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 NQO1P15559 274 aaKnown RBP18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 APOBEC3AP31941 199 aaPredicted RBP18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 ARF1P84077 181 aaKnown RBP18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 IL1RL1Q01638 556 aa18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 KRTAP1-1Q07627 177 aa18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 TRMT5Q32P41 509 aaKnown RBP18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 TMEM123Q8N131 208 aa18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 MAPK1IP1LQ8NDC0 245 aa18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 PIK3C3Q8NEB9 887 aa18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 TAMM41Q96BW9 452 aa18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 MOGAT1Q96PD6 335 aa18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 MRPL39Q9NYK5 338 aaKnown RBP18.92■□□□□ 0.62
CCDC28B-201ENST00000373602 HIVEP2P31629 2446 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 H7C417 338 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 CHP2O43745 196 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 SSX4O60224 188 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 TROVE2P10155 538 aaKnown RBP eCLIP18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 HLA-DOBP13765 273 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 CD247P20963 164 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 CYLC2Q14093 348 aaPredicted RBP18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 VMACQ2NL98 169 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 C3orf36Q3SXR2 165 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 INTS11Q5TA45 600 aaKnown RBP18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 NANOGP8Q6NSW7 305 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 NHLRC1Q6VVB1 395 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 FAM169BQ8N8A8 192 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 OR4D11Q8NGI4 311 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 KATNB1Q9BVA0 655 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 NANOGQ9H9S0 305 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 MOV10Q9HCE1 1003 aaKnown RBP18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 MRGBPQ9NV56 204 aa18.91■□□□□ 0.62
CCDC28B-201ENST00000373602 LRRN3E7EW58 273 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 MT-ATP6P00846 226 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 IGLV1-44P01699 117 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 PCSK6P29122 969 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 ARFIP2P53365 341 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 NUDT6P53370 316 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 TUBA1BP68363 451 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 TUBA4AP68366 448 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 CHRNB3Q05901 458 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 PUDPQ08623 228 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 PMS2P3Q13401 168 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 RAB35Q15286 201 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 CEACAM16Q2WEN9 425 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 COQ5Q5HYK3 327 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 ENTPD8Q5MY95 495 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 TUBA1AQ71U36 451 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 CCDC80Q76M96 950 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 RBM45Q8IUH3 476 aaKnown RBP18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 C10orf53Q8N6V4 93 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 ZNF837Q96EG3 531 aaPredicted RBP18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 CRLF2Q9HC73 371 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 FGFR1OP2Q9NVK5 253 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 NOX1Q9Y5S8 564 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 ALPK2Q86TB3 2170 aa18.9■□□□□ 0.62
CCDC28B-201ENST00000373602 CPSF4LA6NMK7 179 aaKnown RBP18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 INAFM1C9JVW0 142 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 FXYD1O00168 92 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 PLPP3O14495 311 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 LYPD3O95274 346 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 IGKV3-15P01624 115 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 THY1P04216 161 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 BMP4P12644 408 aa18.89■□□□□ 0.61
CCDC28B-201ENST00000373602 PPP2R2BQ00005 443 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms