RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SLC35E2P0CK97 266 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 FAPQ12884 760 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 DPY19L2P2Q6ZN68 376 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 SLC43A2Q8N370 569 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 DEFB123Q8N688 67 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 FRMD1Q8N878 549 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 KCNG3Q8TAE7 436 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 IL1F10Q8WWZ1 152 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 FRZBQ92765 325 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 SLCO5A1Q9H2Y9 848 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 DUSP21Q9H596 190 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 WDR76Q9H967 626 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 DNAJB11Q9UBS4 358 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 CLEC2DQ9UHP7 191 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 MUTYHQ9UIF7 546 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 CCL26Q9Y258 94 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 CA5BQ9Y2D0 317 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 DOCK1Q14185 1865 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 COL4A1P02462 1669 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 ADAM23O75077 832 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 TGM6O95932 706 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 TMEM176BQ3YBM2 270 aaPredicted RBP10.58□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF511Q8NB15 262 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 SUMF2Q8NBJ7 301 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 MIB2Q96AX9 1013 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 DUSP23Q9BVJ7 150 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF286AQ9HBT8 521 aa10.58□□□□□ -0.72
PTPRF-203ENST00000372407 TMEM129A0AVI4 362 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 OTOL1A6NHN0 477 aaPredicted RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 HIDE1A8MVS5 230 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 H7C1C5 153 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 PLPP1O14494 284 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 HCRTR1O43613 425 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 ABLIM3O94929 683 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 CXCL12P48061 93 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 AFF3P51826 1226 aaKnown RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 LCN6P62502 163 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 TMEM64Q6YI46 380 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 BCDIN3DQ7Z5W3 292 aaKnown RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 C19orf47Q8N9M1 422 aaKnown RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 TMEM255BQ8WV15 326 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF681Q96N22 645 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 OR14A2Q96R54 314 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 NUDT22Q9BRQ3 303 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 NMNAT2Q9BZQ4 307 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 METTL9Q9H1A3 318 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 BOLA1Q9Y3E2 137 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 FADS1O60427 444 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 RPS19P39019 145 aaKnown RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 CD79BP40259 229 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 VEGFCP49767 419 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 RPS18P62269 152 aaKnown RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 ZP2Q05996 745 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 FAM57BQ71RH2 274 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 MISPQ8IVT2 679 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SIAH3Q8IW03 269 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 OR5L1Q8NGL2 311 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 PIGCQ92535 297 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SLC35B4Q969S0 331 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 RAB3CQ96E17 227 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SEC22AQ96IW7 307 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF578Q96N58 590 aaPredicted RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 C1QTNF3Q9BXJ4 246 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SELENOIQ9C0D9 397 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 GCM1Q9NP62 436 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 C19orf12Q9NSK7 152 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 NDRG4Q9ULP0 352 aaKnown RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 PPT2Q9UMR5 302 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 NSG1A0A0A6YYJ2 146 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 TRABD2BA6NFA1 517 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 K7EPK0 472 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 RFXAPO00287 272 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SUSD5O60279 629 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 POU3F2P20265 443 aaPredicted RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 CCR9P51686 369 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 MAT1AQ00266 395 aaKnown RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 ACSM1Q08AH1 577 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 BTN1A1Q13410 526 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 STEAP1BQ6NZ63 245 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 KLHDC8BQ8IXV7 354 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 FAM71E2Q8N5Q1 922 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SLC7A6Q92536 515 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF566Q969W8 418 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SGK3Q96BR1 496 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 DUS3LQ96G46 650 aaKnown RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 LCORQ96JN0 433 aaPredicted RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SLC46A1Q96NT5 459 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 PAPOLGQ9BWT3 736 aaKnown RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SLC38A1Q9H2H9 487 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 LIN7BQ9HAP6 207 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 ETV7Q9Y603 341 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 CROCCQ5TZA2 2017 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 TRAV36DV7A0A075B6V5 113 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SLC5A10A0PJK1 596 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 ANKRD33BA6NCL7 494 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 TRAPPC2LH3BP13 241 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 DDAH2O95865 285 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 SNRNP70P08621 437 aaKnown RBP10.57□□□□□ -0.72
PTPRF-203ENST00000372407 YIF1BQ5BJH7 314 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 PLCXD3Q63HM9 321 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms