RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 COPS3Q9UNS2 423 aa10.96□□□□□ -0.66
USP1-201ENST00000339950 NOP16Q9Y3C1 178 aaKnown RBP10.96□□□□□ -0.66
USP1-201ENST00000339950 ARPC4-TTLL3A0A0A6YYG9 625 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 SERTM1A2A2V5 107 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 DISC1C4P0D8 188 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 G3V3Y1 287 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 CCSO14618 274 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 AKR1C2P52895 323 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 AKR1C1Q04828 323 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 CHAF1BQ13112 559 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 TDGQ13569 410 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 TMEM44Q2T9K0 475 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 DUSP19Q8WTR2 217 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 MRPL48Q96GC5 212 aaKnown RBP10.95□□□□□ -0.66
USP1-201ENST00000339950 TSNAXQ99598 290 aaKnown RBP10.95□□□□□ -0.66
USP1-201ENST00000339950 PTDSS2Q9BVG9 487 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 LDHAL6BQ9BYZ2 381 aaPredicted RBP10.95□□□□□ -0.66
USP1-201ENST00000339950 FOLH1BQ9HBA9 442 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 BCL2L10Q9HD36 194 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 KCNN3Q9UGI6 736 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 CD207Q9UJ71 328 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 DICER1Q9UPY3 1922 aaKnown RBP10.95□□□□□ -0.66
USP1-201ENST00000339950 TRPM7Q96QT4 1865 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 LGALS8O00214 317 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 KRT33AO76009 404 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 RENP00797 406 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 TMIGD3P0DMS9 266 aaPredicted RBP10.95□□□□□ -0.66
USP1-201ENST00000339950 TACR3P29371 465 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 CSNK1EP49674 416 aaKnown RBP10.95□□□□□ -0.66
USP1-201ENST00000339950 AGFG1P52594 562 aaKnown RBP10.95□□□□□ -0.66
USP1-201ENST00000339950 FAM69BQ5VUD6 431 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 RAB12Q6IQ22 244 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 HAGHLQ6PII5 290 aaPredicted RBP10.95□□□□□ -0.66
USP1-201ENST00000339950 TMEM92Q6UXU6 159 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 BATF2Q8N1L9 274 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 ZNF321PQ8N8H1 164 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 ZBTB44Q8NCP5 570 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 OR2T4Q8NH00 348 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 OR56B4Q8NH76 319 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 NOX3Q9HBY0 568 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 FLRT3Q9NZU0 649 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 NCDNQ9UBB6 729 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 A0A1B0GV50 99 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 ZNF705EA8MWA4 302 aaPredicted RBP10.95□□□□□ -0.66
USP1-201ENST00000339950 ERVH48-1M5A8F1 160 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 GOSR2O14653 212 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 RBBP9O75884 186 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 HPXP02790 462 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 ZNF250P15622 560 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 PRSS12P56730 875 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 C21orf58P58505 322 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 TMEM184AQ6ZMB5 413 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 MDGA2Q7Z553 956 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 PAQR7Q86WK9 346 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 TMEM151BQ8IW70 566 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 SDR16C5Q8N3Y7 309 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 TSTD1Q8NFU3 115 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 C16orf52Q8NHV5 167 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 PELI1Q96FA3 418 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 BMFQ96LC9 184 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 OR2S2Q9NQN1 319 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 RPH3AQ9Y2J0 694 aaPredicted RBP10.95□□□□□ -0.66
USP1-201ENST00000339950 KIF26BQ2KJY2 2108 aa10.95□□□□□ -0.66
USP1-201ENST00000339950 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 OR6C68A6NDL8 312 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 EEF1E1-BLOC1S5C9J1V9 151 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 CTNSO60931 367 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 SERPINA3P01011 423 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 ZNF823P16415 610 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 SFTPDP35247 375 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 ADAM8P78325 824 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 PITPNAQ00169 270 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 ZIC1Q15915 447 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 SWI5Q1ZZU3 235 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 HEPHL1Q6MZM0 1159 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 MS4A15Q8N5U1 240 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 ACBD4Q8NC06 268 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 OR5D18Q8NGL1 313 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 OR2A5Q96R48 311 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 WDR76Q9H967 626 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 SIGLEC7Q9Y286 467 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 YBX2Q9Y2T7 364 aaKnown RBP10.94□□□□□ -0.66
USP1-201ENST00000339950 PCDHGB7Q9Y5F8 929 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 SLCO1B1Q9Y6L6 691 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 C5orf51A6NDU8 294 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 TOR1AO14656 332 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 TEKQ02763 1124 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 ZNF628Q5EBL2 1059 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 SLITRK4Q8IW52 837 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 ZFAND1Q8TCF1 268 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 SFXN5Q8TD22 340 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 ELOVL3Q9HB03 270 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 GDE1Q9NZC3 331 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 MPDZO75970 2070 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 SLC33A1O00400 549 aaPredicted RBP10.94□□□□□ -0.66
USP1-201ENST00000339950 SYT5O00445 386 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 ADAM11O75078 769 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 TRA2BP62995 288 aaKnown RBP10.94□□□□□ -0.66
USP1-201ENST00000339950 NHLRC1Q6VVB1 395 aa10.94□□□□□ -0.66
USP1-201ENST00000339950 ZNF687Q8N1G0 1237 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms