RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 SLC35D3Q5M8T2 416 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 ACER2Q5QJU3 275 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 C3orf33Q6P1S2 294 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 MDGA2Q7Z553 956 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 KLBQ86Z14 1044 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 IL22RA1Q8N6P7 574 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 OR6S1Q8NH40 331 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 THOC3Q96J01 351 aaKnown RBP12.08□□□□□ -0.48
HMGB1-202ENST00000339872 JSRP1Q96MG2 331 aaPredicted RBP12.08□□□□□ -0.48
HMGB1-202ENST00000339872 TSSK2Q96PF2 358 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 TMEM185BQ9H7F4 350 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 PROK2Q9HC23 129 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 SERINC1Q9NRX5 453 aa12.08□□□□□ -0.48
HMGB1-202ENST00000339872 MRPL39Q9NYK5 338 aaKnown RBP12.08□□□□□ -0.48
HMGB1-202ENST00000339872 EP300Q09472 2414 aaPredicted RBP12.07□□□□□ -0.48
HMGB1-202ENST00000339872 FAM171A2A8MVW0 826 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 PYCR1P32322 319 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 IDUAP35475 653 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 UGT2B10P36537 528 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 SERPINB10P48595 397 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 DIO1P49895 249 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 MAP2K6P52564 334 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 TPBGQ13641 420 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 GGTLC2Q14390 218 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 GLYR1Q49A26 553 aaPredicted RBP12.07□□□□□ -0.48
HMGB1-202ENST00000339872 H3F3CQ6NXT2 135 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 LYPD4Q6UWN0 246 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 POMGNT2Q8NAT1 580 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 MFSD8Q8NHS3 518 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 TMEM203Q969S6 136 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 IL17BQ9UHF5 180 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 CORINQ9Y5Q5 1042 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 AHCTF1Q8WYP5 2266 aa12.07□□□□□ -0.48
HMGB1-202ENST00000339872 DOCK10Q96BY6 2186 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 A0A1W2PQL4 384 aaPredicted RBP12.06□□□□□ -0.48
HMGB1-202ENST00000339872 XKRYO14609 159 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 LRRTM2O43300 516 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 ARHGEF9O43307 516 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 SELENOFO60613 162 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 GLCEO94923 617 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 RENP00797 406 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 TFP02787 698 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 IMPDH2P12268 514 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 CRYBB2P43320 205 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 SLC25A1P53007 311 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 TUBA1BP68363 451 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 ZNF85Q03923 595 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 DYNC1I2Q13409 638 aaKnown RBP12.06□□□□□ -0.48
HMGB1-202ENST00000339872 MFSD13AQ14CX5 517 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 ACKR1Q16570 336 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 TUBA1AQ71U36 451 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 OR1J4Q8NGS1 313 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 TRMT61AQ96FX7 289 aaKnown RBP12.06□□□□□ -0.48
HMGB1-202ENST00000339872 SGCZQ96LD1 299 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 TTTY10Q9BZA0 68 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 RERGLQ9H628 205 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 SNPHO15079 494 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 OPN1LWP04000 364 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 ACVR1BP36896 505 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 HCCSP53701 268 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 RPL27P61353 136 aaKnown RBP12.06□□□□□ -0.48
HMGB1-202ENST00000339872 RPS25P62851 125 aaKnown RBP12.06□□□□□ -0.48
HMGB1-202ENST00000339872 PUDPQ08623 228 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.06□□□□□ -0.48
HMGB1-202ENST00000339872 BEST3Q8N1M1 668 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 KDM8Q8N371 416 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 RFLNBQ8N5W9 214 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 ARIH2OSQ8N7S6 290 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 ADAMTS17Q8TE56 1095 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 NKD1Q969G9 470 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 ZBTB8AQ96BR9 441 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 NXPE2Q96DL1 559 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 GNRHR2Q96P88 292 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 TIMP4Q99727 224 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 ALG12Q9BV10 488 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 COL25A1Q9BXS0 654 aaPredicted RBP12.06□□□□□ -0.48
HMGB1-202ENST00000339872 POTEKPQ9BYX7 375 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 B3GNT4Q9C0J1 378 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 SYT4Q9H2B2 425 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 SRA1Q9HD15 236 aaKnown RBP12.06□□□□□ -0.48
HMGB1-202ENST00000339872 SSR3Q9UNL2 185 aa12.06□□□□□ -0.48
HMGB1-202ENST00000339872 RPH3AQ9Y2J0 694 aaPredicted RBP12.06□□□□□ -0.48
HMGB1-202ENST00000339872 LIPT2A6NK58 231 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 P04436 131 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 LIFP15018 202 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 CELP19835 753 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 DPP4P27487 766 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 EIF1P41567 113 aaKnown RBP12.05□□□□□ -0.48
HMGB1-202ENST00000339872 ENTPD1P49961 510 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 TLE3Q04726 772 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 ACSM1Q08AH1 577 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 C19orf57Q0VDD7 668 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 MYBPHQ13203 477 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 LINC01590Q5TEZ4 76 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 GDPGP1Q6ZNW5 385 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 SSX6Q7RTT6 188 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 SLC35F2Q8IXU6 374 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 PM20D2Q8IYS1 436 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 EXD3Q8N9H8 876 aa12.05□□□□□ -0.48
HMGB1-202ENST00000339872 SCAIQ8N9R8 606 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms