RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 PRKACBP22694 351 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PEBP1P30086 187 aaKnown RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 THEM4Q5T1C6 240 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 ESPNLQ6ZVH7 1005 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 C11orf40Q8WZ69 217 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 ENPP5Q9UJA9 477 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 FAM230AA0A1W2PPH8 454 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 OR2W5A6NFC9 320 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 DOK2O60496 412 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 MYF6P23409 242 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 SRD5A2P31213 254 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 GLYR1Q49A26 553 aaPredicted RBP9.28□□□□□ -0.92
USP54-201ENST00000339859 SLX4IPQ5VYV7 408 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 FUNDC1Q8IVP5 155 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PFN4Q8NHR9 129 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 PIGCQ92535 297 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 C14orf119Q9NWQ9 140 aa9.28□□□□□ -0.92
USP54-201ENST00000339859 A0A1W2PPH5 198 aa9.27□□□□□ -0.92
USP54-201ENST00000339859 SLC22A23A1A5C7 686 aa9.27□□□□□ -0.92
USP54-201ENST00000339859 FUT4P22083 530 aa9.27□□□□□ -0.92
USP54-201ENST00000339859 SYT14P1Q58G82 188 aa9.27□□□□□ -0.92
USP54-201ENST00000339859 FOXN4Q96NZ1 517 aa9.27□□□□□ -0.92
USP54-201ENST00000339859 ZNF701Q9NV72 531 aaPredicted RBP9.27□□□□□ -0.92
USP54-201ENST00000339859 ABCD2Q9UBJ2 740 aa9.27□□□□□ -0.92
USP54-201ENST00000339859 RABL2AQ9UBK7 228 aaPredicted RBP9.27□□□□□ -0.92
USP54-201ENST00000339859 RABL2BQ9UNT1 228 aa9.27□□□□□ -0.92
USP54-201ENST00000339859 B3GALT5Q9Y2C3 310 aa9.27□□□□□ -0.92
USP54-201ENST00000339859 TIMM10BQ9Y5J6 103 aa9.27□□□□□ -0.92
USP54-201ENST00000339859 NUP205Q92621 2012 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 A0A1W2PNR3 127 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 TRAPPC2LH3BP13 241 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 XPNPEP2O43895 674 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 MSR1P21757 451 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 SLC2A5P22732 501 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.27□□□□□ -0.93
USP54-201ENST00000339859 ASRGL1Q7L266 308 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 FAM109AQ8N4B1 249 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 BORCS5Q969J3 196 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 ALG12Q9BV10 488 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 GLRX2Q9NS18 164 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 ZNF226Q9NYT6 803 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 HHLA2Q9UM44 414 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 CD8B2A6NJW9 211 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 SCGB2A1O75556 95 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 CD8BP10966 210 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 SOX8P57073 446 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 CXCR4P61073 352 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 ZNF791Q3KP31 576 aaPredicted RBP9.27□□□□□ -0.93
USP54-201ENST00000339859 WIPI1Q5MNZ9 446 aaPredicted RBP9.27□□□□□ -0.93
USP54-201ENST00000339859 VWCEQ96DN2 955 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 USB1Q9BQ65 265 aaKnown RBP9.27□□□□□ -0.93
USP54-201ENST00000339859 ZNF350Q9GZX5 532 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 SLC1A7O00341 560 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 RAC2P15153 192 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 EFNA3P52797 238 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 IST1P53990 364 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 WNT4P56705 351 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 FAPQ12884 760 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 MPEG1Q2M385 716 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 TBPL2Q6SJ96 375 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 SH2D5Q6ZV89 423 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 PRSS48Q7RTY5 328 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 GCDHQ92947 438 aaPredicted RBP9.27□□□□□ -0.93
USP54-201ENST00000339859 LRFN5Q96NI6 719 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 FAIMQ9NVQ4 179 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 ZNF639Q9UID6 485 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 PIGBOS1A0A0B4J2F0 54 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 H7C1C5 153 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 TFPTP0C1Z6 253 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 ZNF16P17020 682 aaPredicted RBP9.27□□□□□ -0.93
USP54-201ENST00000339859 LCN6P62502 163 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 FOXK2Q01167 660 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 SLC22A25Q6T423 547 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 MDGA2Q7Z553 956 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 DPPA2Q7Z7J5 298 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 OR51T1Q8NGJ9 327 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 SESN1Q9Y6P5 492 aa9.27□□□□□ -0.93
USP54-201ENST00000339859 CLIC3O95833 236 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 MAP2K4P45985 399 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 PRKCDQ05655 676 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 OLIG3Q7RTU3 272 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 SLC46A3Q7Z3Q1 461 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 GLB1L2Q8IW92 636 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 MKXQ8IYA7 352 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 MFSD8Q8NHS3 518 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 TUBA1CQ9BQE3 449 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 MALT1Q9UDY8 824 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 FUOMA2VDF0 154 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 ACTL6AO96019 429 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 CSN2P05814 226 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 OR8G3PP0DMU2 310 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 TOMM5Q8N4H5 51 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 FCAMRQ8WWV6 532 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 ZNF764Q96H86 408 aaPredicted RBP9.26□□□□□ -0.93
USP54-201ENST00000339859 ZNF700Q9H0M5 742 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 MIA3Q5JRA6 1907 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 TSC22D2O75157 780 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 DIRAS3O95661 229 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 GYPBP06028 91 aa9.26□□□□□ -0.93
USP54-201ENST00000339859 LIFP15018 202 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 186.1 ms