RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SVOPQ8N4V2 548 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 ARIH2OSQ8N7S6 290 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 LSM14AQ8ND56 463 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 C9orf43Q8TAL5 461 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 PTP4A1Q93096 173 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 SFXN2Q96NB2 322 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 TSPAN32Q96QS1 320 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 OR5B2Q96R09 309 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 ZDHHC11Q9H8X9 412 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 VCX3AQ9NNX9 186 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 FGF20Q9NP95 211 aaPredicted RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 B3GAT1Q9P2W7 334 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 ERVK-18Q9QC07 812 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 SEC14L4Q9UDX3 406 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 WARS2Q9UGM6 360 aaKnown RBP13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 SNX5Q9Y5X3 404 aa13.39□□□□□ -0.27
CCDC88C-202ENST00000334448 TEX13CA0A0J9YWL9 993 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 SLC22A31A6NKX4 558 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 MS4A18H0YCH9 400 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 RRP8O43159 456 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 AHCYL1O43865 530 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 VAMP5O95183 116 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 OR6A2O95222 327 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 MT-ND2P03891 347 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 PLA2G5P39877 138 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 MTNR1AP48039 350 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 MLLT10P55197 1068 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 RPL27P61353 136 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 C19orf57Q0VDD7 668 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 KRR1Q13601 381 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 ACKR1Q16570 336 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 MS4A18Q3C1V0 323 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 KLHL22Q53GT1 634 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 SLC35D3Q5M8T2 416 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 PLBD1Q6P4A8 553 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 ESPNLQ6ZVH7 1005 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 MEPCEQ7L2J0 689 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 BCDIN3DQ7Z5W3 292 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 EXD3Q8N9H8 876 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 OR52E2Q8NGJ4 325 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 KISS1RQ969F8 398 aaPredicted RBP13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 Q96M85 177 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 TUBA1CQ9BQE3 449 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 TMEM185BQ9H7F4 350 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 AMBNQ9NP70 447 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 KLHL1Q9NR64 748 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 GRHPRQ9UBQ7 328 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 DIMT1Q9UNQ2 313 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 EXOGQ9Y2C4 368 aaKnown RBP13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 NOX1Q9Y5S8 564 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 CNTRLQ7Z7A1 2325 aa13.38□□□□□ -0.27
CCDC88C-202ENST00000334448 A0A1W2PNR3 127 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 CCDC182A6NF36 153 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 A6NIZ1 184 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 ACOT7O00154 380 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 SULT2B1O00204 365 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 RNF13O43567 381 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 F13BP05160 661 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 ACVR2AP27037 513 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 TTKP33981 857 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 SFTPDP35247 375 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 DAP3P51398 398 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 RAC3P60763 192 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 RAP1BP61224 184 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 RAP1AP62834 184 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 ST3GAL4Q11206 333 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 GGTLC2Q14390 218 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 MESTQ5EB52 335 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 WIPI1Q5MNZ9 446 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 GTF2IRD2BQ6EKJ0 949 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 BORAQ6PGQ7 559 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 B3GNT6Q6ZMB0 384 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 KCTD8Q6ZWB6 473 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 GTF2IRD2Q86UP8 949 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 FAM98AQ8NCA5 519 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 ATP6V1C2Q8NEY4 427 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 BBS1Q8NFJ9 593 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 OR4K13Q8NH42 304 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 FCGR1BQ92637 280 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 MUL1Q969V5 352 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 RASD2Q96D21 266 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 LGALS12Q96DT0 336 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 HCAR1Q9BXC0 346 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 VSX1Q9NZR4 365 aaPredicted RBP13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 NDUFA13Q9P0J0 144 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 ZNF346Q9UL40 294 aaKnown RBP13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 RASD1Q9Y272 281 aa13.37□□□□□ -0.27
CCDC88C-202ENST00000334448 MPDZO75970 2070 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 A0A0J9YW62 118 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 SMIM31A0A1B0GVY4 71 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 A0A1W2PRG6 482 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 FAM183AA6NL82 134 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 J3QRE1 110 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 TRAF3IP2O43734 574 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 TRAPPC6AO75865 159 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 AKR7A3O95154 331 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 ACTL6AO96019 429 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 IGHA1P01876 353 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 POU3F2P20265 443 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 TCEA1P23193 301 aaKnown RBP13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms