RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 VENTXO95231 258 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 ACHEP22303 614 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 GPR6P46095 362 aaPredicted RBP12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 TMEM33P57088 247 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 MRPS11P82912 194 aaKnown RBP12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 CEACAM16Q2WEN9 425 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 KRT80Q6KB66 452 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 USP43Q70EL4 1123 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 MDP1Q86V88 176 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 MYPOPQ86VE0 399 aaPredicted RBP12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 PNPT1Q8TCS8 783 aaKnown RBP12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 RDH5Q92781 318 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 JMJD8Q96S16 334 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 SPATA9Q9BWV2 254 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 MEAF6Q9HAF1 191 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 C12orf10Q9HB07 376 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 B3GAT2Q9NPZ5 323 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 HIF1ANQ9NWT6 349 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 HAO1Q9UJM8 370 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 NOX1Q9Y5S8 564 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 WNK2Q9Y3S1 2297 aa12.74□□□□□ -0.37
CCDC88B-201ENST00000301897 A0A0G2JPF8 293 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 HNRNPCL2B2RXH8 293 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 HNRNPCL3B7ZW38 293 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 RFXANKO14593 260 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 HNRNPCL1O60812 293 aaKnown RBP12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 MSMBP08118 114 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 HNRNPCL4P0DMR1 293 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 SAGP10523 405 aaPredicted RBP12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 CDKN2CP42773 168 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 RPS5P46782 204 aaKnown RBP12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 SLC1A6P48664 564 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 UFM1P61960 85 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 MFSD13AQ14CX5 517 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 TRMT5Q32P41 509 aaKnown RBP12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 FAM69AQ5T7M9 428 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 ATG16L1Q676U5 607 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 NET1Q7Z628 596 aaPredicted RBP12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 CLIP4Q8N3C7 705 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 C3orf56Q8N813 242 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 ADPRHL1Q8NDY3 354 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 OR51F2Q8NH61 342 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 PKNOX2Q96KN3 472 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 LRR1Q96L50 414 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 TEX37Q96LM6 180 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 OR2M2Q96R28 347 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 PTDSS2Q9BVG9 487 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 NUF2Q9BZD4 464 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 C20orf27Q9GZN8 174 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 RACGAP1Q9H0H5 632 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 TPK1Q9H3S4 243 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 AIG1Q9NVV5 245 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 RPS6KB2Q9UBS0 482 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 FBXL3Q9UKT7 428 aa12.73□□□□□ -0.37
CCDC88B-201ENST00000301897 PKD1L1Q8TDX9 2849 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 TRAV20A0A0B4J274 112 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 WDR91A4D1P6 747 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 FAM157AC9JC47 383 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 LYNX1G3V0Z9 82 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 TRIM77I1YAP6 450 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 WIPF1O43516 503 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 IL6P05231 212 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 BCHEP06276 602 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 GSNP06396 782 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 IGFBP1P08833 259 aaPredicted RBP12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 ZCCHC18P0CG32 403 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 LYNX1P0DP58 116 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 ANPEPP15144 967 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 GLRXP35754 106 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 CRATP43155 626 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 DSTNP60981 165 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 MAPK11Q15759 364 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 GSG1Q2KHT4 349 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 PDCD4Q53EL6 469 aaKnown RBP12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 ELFN2Q5R3F8 820 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 C6orf89Q6UWU4 347 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 H1FNTQ75WM6 255 aaPredicted RBP12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 SERPINA11Q86U17 422 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 LSRQ86X29 649 aaPredicted RBP12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 TMEM123Q8N131 208 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 KDM8Q8N371 416 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 CLDND2Q8NHS1 167 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 MGARPQ8TDB4 240 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 FAM216AQ8WUB2 273 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 SLC38A5Q8WUX1 472 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 GCDHQ92947 438 aaPredicted RBP12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 SLC38A4Q969I6 547 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 SORT1Q99523 831 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 TMEM109Q9BVC6 243 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 RBM4Q9BWF3 364 aaKnown RBP12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF416Q9BWM5 594 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 MRPL37Q9BZE1 423 aaKnown RBP12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF385DQ9H6B1 395 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 B3GNT2Q9NY97 397 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 B3GAT1Q9P2W7 334 aa12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 ZNF346Q9UL40 294 aaKnown RBP12.72□□□□□ -0.37
CCDC88B-201ENST00000301897 M0R082 166 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 TM9SF1O15321 606 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 ENTPD5O75356 428 aa12.71□□□□□ -0.37
CCDC88B-201ENST00000301897 CD79AP11912 226 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms