RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 EMG1Q92979 244 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 PTP4A1Q93096 173 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 NECTIN4Q96NY8 510 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 PLIN4Q96Q06 1357 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 BTG4Q9NY30 223 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 B4GALT6Q9UBX8 382 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 NRAPQ86VF7 1730 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ATRNL1Q5VV63 1379 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 PDHXO00330 501 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 SYN3O14994 580 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 BRINP1O60477 761 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CNMDO75829 334 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 BCHEP06276 602 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF888P0CJ79 500 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 BMP4P12644 408 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ITGB7P26010 798 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CEBPDP49716 269 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 Q6ZRG5 221 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TECPR1Q7Z6L1 1165 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 OR4K14Q8NGD5 310 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 SEH1LQ96EE3 360 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CUTCQ9NTM9 273 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF337Q9Y3M9 751 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 LOC100289279A0A1B0GTE1 492 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 DLX3O60479 287 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 PTHP01270 115 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CYC1P08574 325 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 LIMK1P53667 647 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 BPIFB3P59826 476 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 GALNT2Q10471 571 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 THNSL2Q86YJ6 484 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 IL17RDQ8NFM7 739 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 NETO1Q8TDF5 533 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CDS1Q92903 461 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 DNAJA3Q96EY1 480 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 POLDIP3Q9BY77 421 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 MMP28Q9H239 520 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF442Q9H7R0 627 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 UBTD1Q9HAC8 227 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 METTL1Q9UBP6 276 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 DNAJB11Q9UBS4 358 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 LOC102723971A0A1B0GUV8 181 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 C8AP07357 584 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 PGA3P0DJD8 388 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TCN2P20062 427 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 COX5AP20674 150 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ACY1Q03154 408 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 SLC35D3Q5M8T2 416 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 Q6ZN92 141 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 A0A0U1RQJ8 604 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 LINC00862A6NCI5 91 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CDRT15L2A8MXV6 281 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TPST2O60704 377 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CD37P11049 281 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 HNRNPA2B1P22626 353 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 EOGTQ5NDL2 527 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 PRAMEF14Q5SWL7 426 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 RHBDF2Q6PJF5 856 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ILDR1Q86SU0 546 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 C2orf69Q8N8R5 385 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 OR4N2Q8NGD1 307 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 OR52R1Q8NGF1 315 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 SMIM7Q9BQ49 75 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 FBXO34Q9NWN3 711 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF219Q9P2Y4 722 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 B4GALT7Q9UBV7 327 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CDC42EP3Q9UKI2 254 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TTC24A2A3L6 582 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CLDN1O95832 211 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ACKR3P25106 362 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 GJA4P35212 333 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 OR4D1Q15615 310 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ELFN2Q5R3F8 820 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 NCR3LG1Q68D85 454 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 FAM163AQ96GL9 167 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 NARFLQ9H6Q4 476 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ASAH2Q9NR71 780 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TREM2Q9NZC2 230 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 C4orf47A7E2U8 309 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 EMC8O43402 210 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 NME1P15531 152 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 DPP4P27487 766 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 OR3A1P47881 315 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 GRB2P62993 217 aaKnown RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF85Q03923 595 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 OR8J2Q8NGG1 315 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 OR51A2Q8NGJ7 313 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 APH1AQ96BI3 265 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 HSD17B14Q9BPX1 270 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ZNF2Q9BSG1 426 aaPredicted RBP4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TMEM191AQ9H0A3 160 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 FZD3Q9NPG1 666 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TLR9Q9NR96 1032 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 RNF19AQ9NV58 838 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 TRAV18A0A075B6X5 111 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 VSTM2BA6NLU5 285 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 ST8SIA5O15466 376 aa4.52□□□□□ -1.69
CSMD3-201ENST00000297405 CXCL8P10145 99 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms