RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 HS6ST2Q96MM7 605 aa11.79□□□□□ -0.52
VPS28-201ENST00000292510 SLCO5A1Q9H2Y9 848 aa11.79□□□□□ -0.52
VPS28-201ENST00000292510 ASB6Q9NWX5 421 aa11.79□□□□□ -0.52
VPS28-201ENST00000292510 MED29Q9NX70 200 aa11.79□□□□□ -0.52
VPS28-201ENST00000292510 ACTR3BQ9P1U1 418 aa11.79□□□□□ -0.52
VPS28-201ENST00000292510 UPB1Q9UBR1 384 aa11.79□□□□□ -0.52
VPS28-201ENST00000292510 MALT1Q9UDY8 824 aa11.79□□□□□ -0.52
VPS28-201ENST00000292510 PRPF19Q9UMS4 504 aaKnown RBP11.79□□□□□ -0.52
VPS28-201ENST00000292510 MED31Q9Y3C7 131 aa11.79□□□□□ -0.52
VPS28-201ENST00000292510 PRR14LQ5THK1 2151 aa11.79□□□□□ -0.52
VPS28-201ENST00000292510 ABCA4P78363 2273 aa11.79□□□□□ -0.52
VPS28-201ENST00000292510 SPG11Q96JI7 2443 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 CASKO14936 926 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 CTAG2O75638 210 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 RAD51DO75771 328 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 OR7A10O76100 309 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 CNOT4O95628 575 aaKnown RBP11.78□□□□□ -0.52
VPS28-201ENST00000292510 ITGA5P08648 1049 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 COX5AP20674 150 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 DNAJA1P31689 397 aaKnown RBP11.78□□□□□ -0.52
VPS28-201ENST00000292510 TRAM2Q15035 370 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 TAB1Q15750 504 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 STK11Q15831 433 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 IQCCQ4KMZ1 466 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 NHLRC1Q6VVB1 395 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 BHLHA15Q7RTS1 189 aaPredicted RBP11.78□□□□□ -0.52
VPS28-201ENST00000292510 CYP4Z1Q86W10 505 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 WFDC8Q8IUA0 241 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 NRMQ8IXM6 262 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 PIK3C3Q8NEB9 887 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 STEAP2Q8NFT2 490 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 TXNDC15Q96J42 360 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 ALKBH3Q96Q83 286 aaPredicted RBP11.78□□□□□ -0.52
VPS28-201ENST00000292510 EMC6Q9BV81 110 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 HDHD5Q9BXW7 423 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 NMNAT1Q9HAN9 279 aaPredicted RBP11.78□□□□□ -0.52
VPS28-201ENST00000292510 RASSF1Q9NS23 344 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 TAS2R5Q9NYW4 299 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 ZNF229Q9UJW7 825 aa11.78□□□□□ -0.52
VPS28-201ENST00000292510 FAM32AQ9Y421 112 aaKnown RBP11.78□□□□□ -0.52
VPS28-201ENST00000292510 A0A087WUU8 490 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 LOC102725191A0A1B0GVB3 256 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 TCRBV5S2A0A599 114 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 FAM221AA4D161 298 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 DEFB108AA8MXU0 73 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 BLOC1S5-TXNDC5H3BN57 136 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 PDLIM1O00151 329 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 GYG2O15488 501 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 UPK3AO75631 287 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 ZNF432O94892 652 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 OR6A2O95222 327 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 HRGP04196 525 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 HIST1H2ABP04908 130 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 H1F0P07305 194 aaKnown RBP11.77□□□□□ -0.53
VPS28-201ENST00000292510 IFI30P13284 250 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 RHCEP18577 417 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 MAKP20794 623 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 CRYGSP22914 178 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 BNIP1Q12981 228 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 TRIM25Q14258 630 aaKnown RBP11.77□□□□□ -0.53
VPS28-201ENST00000292510 CARD17Q5XLA6 110 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 FBXW10Q5XX13 1052 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 ZNF730Q6ZMV8 503 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 HIST3H2AQ7L7L0 130 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 LINGO2Q7L985 606 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 NANOGNBQ7Z5D8 188 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 DHFR2Q86XF0 187 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 NRGNQ92686 78 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 HIST1H2ACQ93077 130 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 BPIFA2Q96DR5 249 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 LURAP1Q96LR2 239 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 OR2M2Q96R28 347 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 SEPHS2Q99611 448 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 POLDIP3Q9BY77 421 aaKnown RBP11.77□□□□□ -0.53
VPS28-201ENST00000292510 ZNF226Q9NYT6 803 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 RCE1Q9Y256 329 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 PDZD2O15018 2839 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 ALPK2Q86TB3 2170 aa11.77□□□□□ -0.53
VPS28-201ENST00000292510 AKAP6Q13023 2319 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 TRBV4-1A0A0J9YWV2 114 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 A0A1W2PPR1 153 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 A0A1W2PR80 420 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 CIB4A0PJX0 185 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 RNF13O43567 381 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 KRT33AO76009 404 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 IGF2P01344 180 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 FABP3P05413 133 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 IFNGR1P15260 489 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 PPP3CBP16298 524 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 CDH2P19022 906 aaPredicted RBP11.76□□□□□ -0.53
VPS28-201ENST00000292510 RPL18Q07020 188 aaKnown RBP11.76□□□□□ -0.53
VPS28-201ENST00000292510 MELKQ14680 651 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 DNAL1Q4LDG9 190 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 FGD3Q5JSP0 725 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 LCN8Q6JVE9 175 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 PODNL1Q6PEZ8 512 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 MBOAT2Q6ZWT7 520 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 PXKQ7Z7A4 578 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 TMEM123Q8N131 208 aa11.76□□□□□ -0.53
VPS28-201ENST00000292510 POMGNT2Q8NAT1 580 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms