RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CLDN6P56747 220 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 CLDN17P56750 224 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 EMC4Q5J8M3 183 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 HBMQ6B0K9 141 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 UTS2BQ765I0 119 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 IZUMO1Q8IYV9 350 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 ZADH2Q8N4Q0 377 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 ZBTB8AQ96BR9 441 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 TAS2R16Q9NYV7 291 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 SIGLEC7Q9Y286 467 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 B3GALT5Q9Y2C3 310 aa10.55□□□□□ -0.72
VPS4A-201ENST00000254950 A0A1W2PNR3 127 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 VAMP5O95183 116 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 HIST1H1CP16403 213 aaKnown RBP10.54□□□□□ -0.72
VPS4A-201ENST00000254950 GALK2Q01415 458 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 CAMK2DQ13557 499 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 TMEM201Q5SNT2 666 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 TMPRSS9Q7Z410 1059 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 KCTD20Q7Z5Y7 419 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 ANKRD13BQ86YJ7 626 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 LSMEM1Q8N8F7 131 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 OR13F1Q8NGS4 319 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 LIN37Q96GY3 246 aaPredicted RBP10.54□□□□□ -0.72
VPS4A-201ENST00000254950 MNTQ99583 582 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 TEAD3Q99594 435 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 PLA2G12AQ9BZM1 189 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 SP140LQ9H930 580 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 C12orf10Q9HB07 376 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 CENPVL1A0A0U1RR11 272 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.54□□□□□ -0.72
VPS4A-201ENST00000254950 PSMD9O00233 223 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 SLC2A10O95528 541 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 MADCAM1Q13477 382 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF74Q16587 644 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 MOGQ16653 247 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 C12orf73Q69YU5 71 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 AAED1Q7RTV5 226 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF687Q8N1G0 1237 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 ARIH2OSQ8N7S6 290 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 FAR1Q8WVX9 515 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 COX4I2Q96KJ9 171 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 HIST1H2AAQ96QV6 131 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 OR51E2Q9H255 320 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 C20orf141Q9NUB4 165 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 HDGFL3Q9Y3E1 203 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 GPR171O14626 319 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 GLCEO94923 617 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 IGKV1D-16P01601 117 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 SDHBP21912 280 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 ACKR1Q16570 336 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 DEFB109BQ30KR1 87 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF511Q8NB15 262 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 PGAM5Q96HS1 289 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 FOXN4Q96NZ1 517 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 SPSB2Q99619 263 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 SYNPO2LQ9H987 977 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 MMP25Q9NPA2 562 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 DDX28Q9NUL7 540 aaKnown RBP10.54□□□□□ -0.72
VPS4A-201ENST00000254950 CAMK2AQ9UQM7 478 aa10.54□□□□□ -0.72
VPS4A-201ENST00000254950 KDM4EB2RXH2 506 aaPredicted RBP10.53□□□□□ -0.72
VPS4A-201ENST00000254950 SURF4O15260 269 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 HYAL3O43820 417 aaPredicted RBP10.53□□□□□ -0.72
VPS4A-201ENST00000254950 WDPCPO95876 746 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 CCNOP22674 350 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF136P52737 540 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 DSCR4P56555 118 aaPredicted RBP10.53□□□□□ -0.72
VPS4A-201ENST00000254950 SYT6Q5T7P8 510 aaPredicted RBP10.53□□□□□ -0.72
VPS4A-201ENST00000254950 TUBA3EQ6PEY2 450 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 MRGPREQ86SM8 312 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 JAGN1Q8N5M9 183 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 LRRC17Q8N6Y2 441 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 ASB17Q8WXJ9 295 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 PARPBPQ9NWS1 579 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 FLRT3Q9NZU0 649 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 DHDHQ9UQ10 334 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 A0A1W2PPK0 400 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 TMEM72A0PK05 275 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 LRP3O75074 770 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 SLC43A1O75387 559 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 SBK2P0C263 348 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 IFNGR1P15260 489 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 HSF1Q00613 529 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 NIPAL3Q6P499 406 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF775Q96BV0 537 aaPredicted RBP10.53□□□□□ -0.72
VPS4A-201ENST00000254950 MRPL33O75394 65 aaKnown RBP10.53□□□□□ -0.72
VPS4A-201ENST00000254950 GDI2P50395 445 aaKnown RBP10.53□□□□□ -0.72
VPS4A-201ENST00000254950 TMPRSS12Q86WS5 348 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 PM20D2Q8IYS1 436 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 OR5AK2Q8NH90 309 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 KTI12Q96EK9 354 aaPredicted RBP10.53□□□□□ -0.72
VPS4A-201ENST00000254950 OR5M11Q96RB7 305 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 MALT1Q9UDY8 824 aa10.53□□□□□ -0.72
VPS4A-201ENST00000254950 ZNF891A8MT65 544 aaPredicted RBP10.52□□□□□ -0.72
VPS4A-201ENST00000254950 TO15178 435 aa10.52□□□□□ -0.72
VPS4A-201ENST00000254950 KLK10O43240 276 aa10.52□□□□□ -0.72
VPS4A-201ENST00000254950 PSMB10P40306 273 aa10.52□□□□□ -0.72
VPS4A-201ENST00000254950 GABRA4P48169 554 aa10.52□□□□□ -0.72
VPS4A-201ENST00000254950 CDK5Q00535 292 aa10.52□□□□□ -0.72
VPS4A-201ENST00000254950 CHAF1BQ13112 559 aa10.52□□□□□ -0.72
VPS4A-201ENST00000254950 TIGD3Q6B0B8 471 aa10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms