RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 UPK3BL2E5RIL1 263 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 F5H6K3 240 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 GIPRP48546 466 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MTHFSP49914 203 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 FAAP100Q0VG06 881 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 MGAT2Q10469 447 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 STEAP4Q687X5 459 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TMIGD1Q6UXZ0 262 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM173Q86WV6 379 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 C19orf47Q8N9M1 422 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PLPP5Q8NEB5 264 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 HYLS1Q96M11 299 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 TRIB3Q96RU7 358 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 NAA38Q9BRA0 125 aaKnown RBP3.31□□□□□ -1.88
SCN1A-221ENST00000641996 SLC30A2Q9BRI3 323 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 PKIGQ9Y2B9 76 aa3.31□□□□□ -1.88
SCN1A-221ENST00000641996 CARMIL3Q8ND23 1372 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CLDN1O95832 211 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 VPREB1P12018 145 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MYF5P13349 255 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CSNK2A2P19784 350 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SDHBP21912 280 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 PSMB4P28070 264 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 GLUD2P49448 558 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CAMPP49913 170 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 VAMP7P51809 220 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 GGTA1PQ4G0N0 100 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 EXOSC6Q5RKV6 272 aaKnown RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 FAAP20Q6NZ36 180 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CEACAM20Q6UY09 585 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 PTAR1Q7Z6K3 402 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SLC34A3Q8N130 599 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF808Q8N4W9 903 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 FITM2Q8N6M3 262 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SLC22A17Q8WUG5 538 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SLC38A5Q8WUX1 472 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 FCAMRQ8WWV6 532 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 FUBP1Q96AE4 644 aaKnown RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CHRNA10Q9GZZ6 450 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 LACRTQ9GZZ8 138 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 C1orf198Q9H425 327 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 LHX6Q9UPM6 363 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SLX4Q8IY92 1834 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM200CA6NKL6 621 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 HNRNPDLO14979 420 aaKnown RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SERPINA5P05154 406 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CTXN2P0C2S0 81 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MAS1LP35410 378 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MAP2K3P46734 347 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CACNA1SQ13698 1873 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 DRAM2Q6UX65 266 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 COL20A1Q9P218 1284 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 NSG2Q9Y328 171 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CREG1O75629 220 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 KLF3P57682 345 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR2F1Q13607 317 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 GALNTL6Q49A17 601 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MSS51Q4VC12 460 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 PDLIM3Q53GG5 364 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR10K2Q6IF99 312 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MRPL43Q8N983 215 aaKnown RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 BOD1Q96IK1 185 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 P2RY13Q9BPV8 354 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR8D2Q9GZM6 311 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 CHST7Q9NS84 486 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ARL15Q9NXU5 204 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ELOVL5Q9NYP7 299 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MINPP1Q9UNW1 487 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF835Q9Y2P0 537 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 A0A0U1RQV1 116 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR4C45A6NMZ5 311 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM189-UBE2V1I3L0A0 370 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR4F21O95013 312 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 C6orf47O95873 294 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ALDOCP09972 364 aaKnown RBP3.3□□□□□ -1.88
SCN1A-221ENST00000641996 AKR1C4P17516 323 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 GNG5P63218 68 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ATP6AP1LQ52LC2 224 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TTC32Q5I0X7 151 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR2T2Q6IF00 324 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ABRAQ8N0Z2 381 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 DBF4BQ8NFT6 615 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR52I2Q8NH67 350 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 WDR20Q8TBZ3 569 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MRAPQ8TCY5 172 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SCLYQ96I15 445 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SPATC1LQ9H0A9 340 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR52A5Q9H2C5 316 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 MYOTQ9UBF9 498 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF195O14628 629 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR2C1O95371 312 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TK1P04183 234 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TFPIP10646 304 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 PLK1P53350 603 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 TNK1Q13470 666 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 OR51I2Q9H344 312 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 BET1LQ9NYM9 111 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 SH2B3Q9UQQ2 575 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 B5MCH6 92 aa3.3□□□□□ -1.88
SCN1A-221ENST00000641996 PCDH7O60245 1069 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms