RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CLCN4P51793 760 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SMAD4Q13485 552 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TEAD2Q15562 447 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 MEP1AQ16819 746 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 EML3Q32P44 896 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PDLIM3Q53GG5 364 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CTRB2Q6GPI1 263 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 LCN8Q6JVE9 175 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 MED25Q71SY5 747 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ADGRA1Q86SQ6 560 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 AQP12AQ8IXF9 295 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF461Q8TAF7 563 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PSMF1Q92530 271 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 FBXL18Q96ME1 805 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TSSK6Q9BXA6 273 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 NMUR1Q9HB89 426 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 IL20Q9NYY1 176 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PIAS3Q9Y6X2 628 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ENPP4Q9Y6X5 453 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 COL1A1P02452 1464 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 COL5A2P05997 1499 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 A0A0B4J2A0 478 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 LRRC3CA6NJW4 275 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GLO1Q04760 184 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF91Q05481 1191 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SLC17A1Q14916 467 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TIGITQ495A1 244 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 IL20RBQ6UXL0 311 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CMASQ8NFW8 434 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OR10G2Q8NGC3 310 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 RXFP2Q8WXD0 754 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZG16BQ96DA0 208 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM41AQ96HV5 264 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OR7D2Q96RA2 312 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OR52B2Q96RD2 323 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 NIPSNAP3BQ9BS92 247 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 VRTNQ9H8Y1 702 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CPNE5Q9HCH3 593 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OBP2BQ9NPH6 170 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 EQTNQ9NQ60 294 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SHPKQ9UHJ6 478 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SCML2Q9UQR0 700 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 FAM170BA6NMN3 283 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 F2RL2O00254 374 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ERI3O43414 337 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 F13BP05160 661 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 IGFBP1P08833 259 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF286BP0CG31 522 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ACP2P11117 423 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ACP5P13686 325 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 POU3F2P20265 443 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PSMB4P28070 264 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ARL2P36404 184 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PLAURQ03405 335 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZP2Q05996 745 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 KCNAB1Q14722 419 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TP53I3Q53FA7 332 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SLC47A2Q86VL8 602 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 WDTC1Q8N5D0 677 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 LMNTD1Q8N9Z9 388 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SDSLQ96GA7 329 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SENP8Q96LD8 212 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PKP2Q99959 881 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 POLDIP3Q9BY77 421 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 KCNK15Q9H427 330 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SLC23A1Q9UHI7 598 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF490Q9ULM2 529 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 NOSIPQ9Y314 301 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 UBE2J1Q9Y385 318 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 LSM5Q9Y4Y9 91 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ARL2-SNX15V9GYD0 113 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 A0A1B0GV72 72 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF850A8MQ14 1090 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 H3BSA7 217 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF701M0R085 212 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 P2RY10O00398 339 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 PROSCO94903 275 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CSF3P09919 207 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 APEHP13798 732 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CRISP2P16562 243 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 RHOQP17081 205 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GP2P55259 537 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ERVFC1-1P60608 527 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 CYP1B1Q16678 543 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 GTDC1Q4AE62 458 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 METTL11BQ5VVY1 283 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 STEAP4Q687X5 459 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SLC25A42Q86VD7 318 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM102Q8N9M5 508 aaPredicted RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 DMBX1Q8NFW5 382 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OR6T1Q8NGN1 323 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 OR2T11Q8NH01 316 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF599Q96NL3 588 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 TMEM109Q9BVC6 243 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 SLC12A9Q9BXP2 914 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 ERVMER34-1Q9H9K5 563 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 UCK1Q9HA47 277 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 KCNG2Q9UJ96 466 aa2.6□□□□□ -1.99
SCN1A-219ENST00000641575 RCL1Q9Y2P8 373 aaKnown RBP2.6□□□□□ -1.99
SCN1A-219ENST00000641575 DCCP43146 1447 aa2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms