RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SLC26A11Q86WA9 606 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PAQR7Q86WK9 346 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SNX32Q86XE0 403 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ZDHHC21Q8IVQ6 265 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MISPQ8IVT2 679 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ZNF619Q8N2I2 560 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 LRRC43Q8N309 656 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 FTMTQ8N4E7 242 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ZADH2Q8N4Q0 377 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 FADS6Q8N9I5 356 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CNNM3Q8NE01 707 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 VN1R2Q8NFZ6 395 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OR4K14Q8NGD5 310 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OR4D5Q8NGN0 318 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OR2L8Q8NGY9 312 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OR52P1PQ8NH57 321 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ZNF461Q8TAF7 563 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RAET1EQ8TD07 263 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ACTRT1Q8TDG2 376 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 C17orf50Q8WW18 174 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SPRYD4Q8WW59 207 aaPredicted RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 ACOT11Q8WXI4 607 aaPredicted RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 ST8SIA1Q92185 356 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 FCGR1BQ92637 280 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MRPS31Q92665 395 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 FGF11Q92914 225 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ATP6V1E2Q96A05 226 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PINX1Q96BK5 328 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 RMI2Q96E14 147 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CMTM7Q96FZ5 175 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 AURKBQ96GD4 344 aaPredicted RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 MS4A14Q96JA4 679 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 AMDHD1Q96NU7 426 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 COL21A1Q96P44 957 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OXGR1Q96P68 337 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TMEM237Q96Q45 408 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MTMR9Q96QG7 549 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 OR2A5Q96R48 311 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 KCNK16Q96T55 309 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RNF5Q99942 180 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MRPL45Q9BRJ2 306 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 FICDQ9BVA6 458 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CAPS2Q9BXY5 557 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ROGDIQ9GZN7 287 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 NACA2Q9H009 215 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SMYD3Q9H7B4 428 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 WDR76Q9H967 626 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SIAEQ9HAT2 523 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 C12orf10Q9HB07 376 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 LY9Q9HBG7 655 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PLGRKTQ9HBL7 147 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 POPDC2Q9HBU9 364 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 NOX3Q9HBY0 568 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 VAT1LQ9HCJ6 419 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 POLD4Q9HCU8 107 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RAB18Q9NP72 206 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SLCO1B3Q9NPD5 702 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 NGBQ9NPG2 151 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SLC17A5Q9NRA2 495 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CTPS2Q9NRF8 586 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ZNF355PQ9NSJ1 428 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 HOXC10Q9NYD6 342 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RDH8Q9NYR8 311 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TREM2Q9NZC2 230 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 IL36GQ9NZH8 169 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 AIPL1Q9NZN9 384 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 DEC1Q9P2X7 70 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 GNG12Q9UBI6 72 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 CHRNA9Q9UGM1 479 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TBK1Q9UHD2 729 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 NUFIP1Q9UHK0 495 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 ZNF222Q9UK12 451 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 NOL7Q9UMY1 257 aaKnown RBP0.15□□□□□ -2.39
VPS35-212ENST00000640313 NPIPA1Q9UND3 350 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MGAT4BQ9UQ53 548 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SIGLEC7Q9Y286 467 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 POLDIP2Q9Y2S7 368 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 KNSTRNQ9Y448 316 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 MFHAS1Q9Y4C4 1052 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TIMM10BQ9Y5J6 103 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 RFNGQ9Y644 331 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 ALG6Q9Y672 507 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 U3KQV3 271 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 SORL1Q92673 2214 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 PLA2R1Q13018 1463 aa0.15□□□□□ -2.39
VPS35-212ENST00000640313 TET2Q6N021 2002 aaPredicted RBP0.14□□□□□ -2.39
VPS35-212ENST00000640313 PDS5BQ9NTI5 1447 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 A0A087WZY1 265 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 IGHV3-74A0A0B4J1X5 117 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 TRAV40A0A0B4J280 105 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 IGHV5-10-1A0A0J9YXX1 117 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 A0A0U1RQV1 116 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 RNF103-CHMP3A0A140T963 221 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 IQANK1A0A1B0GTG1 560 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 A0A1B0GVI7 797 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 A0A1B0GW55 424 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 A0A1W2PNN7 141 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 A0A1W2PPV9 198 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 TMEM223A0PJW6 202 aa0.14□□□□□ -2.39
VPS35-212ENST00000640313 SYCE3A1L190 88 aa0.14□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms