RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ZNF703Q9H7S9 590 aaPredicted RBP16.57■□□□□ 0.24
CLN3-254ENST00000637050 ALKBH4Q9NXW9 302 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 TRAPPC4Q9Y296 219 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 PCDHGB1Q9Y5G3 927 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 SNX5Q9Y5X3 404 aa16.57■□□□□ 0.24
CLN3-254ENST00000637050 FAM183AA6NL82 134 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 SNTNA6NMZ2 147 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 OPN1LWP04000 364 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 CDK1P06493 297 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 GTF2E2P29084 291 aaKnown RBP16.56■□□□□ 0.24
CLN3-254ENST00000637050 SDHAP31040 664 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 SFTPDP35247 375 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 ALDH3B2P48448 385 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 RAC1P63000 192 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 ZP4Q12836 540 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 HYAL4Q2M3T9 481 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 PLBD1Q6P4A8 553 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 KCTD8Q6ZWB6 473 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 H1FNTQ75WM6 255 aaPredicted RBP16.56■□□□□ 0.24
CLN3-254ENST00000637050 BBS1Q8NFJ9 593 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 PTP4A1Q93096 173 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 RFKQ969G6 155 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 TTTY12Q9BZ98 90 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 CCDC90BQ9GZT6 254 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 MRPS18AQ9NVS2 196 aaKnown RBP16.56■□□□□ 0.24
CLN3-254ENST00000637050 B4GALT7Q9UBV7 327 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 NCKAP5O14513 1909 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 A0A1W2PNR3 127 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 PRR23D1E9PI22 279 aaPredicted RBP16.56■□□□□ 0.24
CLN3-254ENST00000637050 TRAPPC6AO75865 159 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 GLSO94925 669 aaPredicted RBP16.56■□□□□ 0.24
CLN3-254ENST00000637050 OR6A2O95222 327 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 MT-ND2P03891 347 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 HPNP05981 417 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 PRR23D2P0DMB1 279 aaPredicted RBP16.56■□□□□ 0.24
CLN3-254ENST00000637050 MEOX1P50221 254 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.56■□□□□ 0.24
CLN3-254ENST00000637050 ST3GAL4Q11206 333 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 CRMP1Q14194 572 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 ZNF766Q5HY98 468 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 EMC4Q5J8M3 183 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 GPR139Q6DWJ6 353 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 GID4Q8IVV7 300 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 ZFP62Q8NB50 900 aaPredicted RBP16.56■□□□□ 0.24
CLN3-254ENST00000637050 SLC37A3Q8NCC5 494 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 OR52E2Q8NGJ4 325 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 OR4K13Q8NH42 304 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 MIB2Q96AX9 1013 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 Q96M85 177 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 DDOQ99489 341 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 SMAD5Q99717 465 aaKnown RBP16.56■□□□□ 0.24
CLN3-254ENST00000637050 HCAR1Q9BXC0 346 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 CHST11Q9NPF2 352 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 INIPQ9NRY2 104 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.56■□□□□ 0.24
CLN3-254ENST00000637050 B3GALT5Q9Y2C3 310 aa16.56■□□□□ 0.24
CLN3-254ENST00000637050 C11orf98E9PRG8 122 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 MS4A18H0YCH9 400 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 RNF13O43567 381 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 PMS2P2O95744 297 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 STSP08842 583 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 JUNBP17275 347 aaPredicted RBP16.55■□□□□ 0.24
CLN3-254ENST00000637050 PCMT1P22061 227 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 EIF2S3P41091 472 aaKnown RBP16.55■□□□□ 0.24
CLN3-254ENST00000637050 CDH11P55287 796 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 MS4A18Q3C1V0 323 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 WIPI1Q5MNZ9 446 aaPredicted RBP16.55■□□□□ 0.24
CLN3-254ENST00000637050 XAF1Q6GPH4 301 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 NIPAL3Q6P499 406 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 CCDC81Q6ZN84 652 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 TMPPEQ6ZT21 453 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 SPACA3Q8IXA5 215 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 TMEM178AQ8NBL3 297 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 FAM98AQ8NCA5 519 aaKnown RBP16.55■□□□□ 0.24
CLN3-254ENST00000637050 NPEPL1Q8NDH3 523 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 ADPRHL1Q8NDY3 354 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 SDR9C7Q8NEX9 313 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 RASD2Q96D21 266 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 TSPAN32Q96QS1 320 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 MED20Q9H944 212 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 FANCFQ9NPI8 374 aa16.55■□□□□ 0.24
CLN3-254ENST00000637050 H2AFY2Q9P0M6 372 aaPredicted RBP16.55■□□□□ 0.24
CLN3-254ENST00000637050 TEX13CA0A0J9YWL9 993 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 GJE1A6NN92 205 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 IGHMP01871 453 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 PAICSP22234 425 aaKnown RBP16.54■□□□□ 0.24
CLN3-254ENST00000637050 AHCYP23526 432 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 ACVR2AP27037 513 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 C21orf33P30042 268 aaPredicted RBP16.54■□□□□ 0.24
CLN3-254ENST00000637050 HTR1FP30939 366 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 RFC3P40938 356 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 MTNR1AP48039 350 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 DIO1P49895 249 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 MVKQ03426 396 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 TLE3Q04726 772 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 EMX1Q04741 257 aaPredicted RBP16.54■□□□□ 0.24
CLN3-254ENST00000637050 PUDPQ08623 228 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 ZNF239Q16600 458 aaKnown RBP16.54■□□□□ 0.24
CLN3-254ENST00000637050 NADK2Q4G0N4 442 aa16.54■□□□□ 0.24
CLN3-254ENST00000637050 STX19Q8N4C7 294 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms