RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PRKAA2P54646 552 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 ETF1P62495 437 aaKnown RBP12.34□□□□□ -0.43
CLN3-249ENST00000636685 PLAURQ03405 335 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 TAF9Q16594 264 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 FXNQ16595 210 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 NKPD1Q17RQ9 610 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 TRMT5Q32P41 509 aaKnown RBP12.34□□□□□ -0.43
CLN3-249ENST00000636685 ZNF362Q5T0B9 420 aaPredicted RBP12.34□□□□□ -0.43
CLN3-249ENST00000636685 ZDHHC24Q6UX98 284 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 OR5AK3PQ8NH89 298 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 L3HYPDHQ96EM0 354 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 FCRL1Q96LA6 429 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 RSPO3Q9BXY4 272 aaPredicted RBP12.34□□□□□ -0.43
CLN3-249ENST00000636685 C1orf109Q9NX04 203 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 B3GNT2Q9NY97 397 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 UBAP1Q9NZ09 502 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 TMEM216Q9P0N5 145 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 TAAR3PQ9P1P4 343 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 PURGQ9UJV8 347 aaKnown RBP12.34□□□□□ -0.43
CLN3-249ENST00000636685 SLC35A3Q9Y2D2 325 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 TENM3Q9P273 2699 aa12.34□□□□□ -0.43
CLN3-249ENST00000636685 PPIAL4EA0A075B759 164 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 PPIAL4CA0A0B4J2A2 164 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 CLPSL1A2RUU4 121 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 FAM187AA6NFU0 413 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 CLDN24A6NM45 220 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 C17orf100A8MU93 164 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 PPIAL4DF5H284 164 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 C3orf80F5H4A9 247 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 TRAPPC2LH3BP13 241 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 RPL36A-HNRNPH2H7BZ11 118 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 RAD51CO43502 376 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 TRAF3IP2O43734 574 aaPredicted RBP12.33□□□□□ -0.44
CLN3-249ENST00000636685 RRP9O43818 475 aaKnown RBP12.33□□□□□ -0.44
CLN3-249ENST00000636685 SCN2BO60939 215 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 C6orf47O95873 294 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 CLPTM1O96005 669 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 HLA-HP01893 362 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 INHBAP08476 426 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 PPIAL4FP0DN26 164 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 PRPH2P23942 346 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 MTNR1AP48039 350 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 RPS23P62266 143 aaKnown RBP12.33□□□□□ -0.44
CLN3-249ENST00000636685 ZNF154Q13106 437 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 USP51Q70EK9 711 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 ARFGAP2Q8N6H7 521 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 CCNYL1Q8N7R7 359 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 OR7A2PQ8NGA2 310 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 PSMA8Q8TAA3 256 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 RAB1CQ92928 201 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 KTI12Q96EK9 354 aaPredicted RBP12.33□□□□□ -0.44
CLN3-249ENST00000636685 TIMD4Q96H15 378 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 METTL2AQ96IZ6 378 aaKnown RBP12.33□□□□□ -0.44
CLN3-249ENST00000636685 TSPAN32Q96QS1 320 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 ZNF350Q9GZX5 532 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 ACSS3Q9H6R3 686 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 GPR35Q9HC97 309 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 HINT3Q9NQE9 182 aaKnown RBP12.33□□□□□ -0.44
CLN3-249ENST00000636685 TNFRSF19Q9NS68 423 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 ADPRHL2Q9NX46 363 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 C1RLQ9NZP8 487 aa12.33□□□□□ -0.44
CLN3-249ENST00000636685 HOXA3O43365 443 aaPredicted RBP12.32□□□□□ -0.44
CLN3-249ENST00000636685 CRCPO75575 148 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 FOXH1O75593 365 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 NGFP01138 241 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 IGHV4-38-2P0DP08 117 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 LAMP1P11279 417 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 CD79AP11912 226 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 ZNF14P17017 642 aaPredicted RBP12.32□□□□□ -0.44
CLN3-249ENST00000636685 GALK2Q01415 458 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 TEKQ02763 1124 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 PIGFQ07326 219 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 HLXQ14774 488 aaPredicted RBP12.32□□□□□ -0.44
CLN3-249ENST00000636685 CEACAM16Q2WEN9 425 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 ARHGAP11BQ3KRB8 267 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 MMEL1Q495T6 779 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 VAX1Q5SQQ9 334 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 TMEM154Q6P9G4 183 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 SYT10Q6XYQ8 523 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 NOA1Q8NC60 698 aaKnown RBP12.32□□□□□ -0.44
CLN3-249ENST00000636685 OR2T11Q8NH01 316 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 SFXN5Q8TD22 340 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 ST7LQ8TDW4 575 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 DCAKDQ8WVC6 231 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 OR5P2Q8WZ92 322 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 CNOT9Q92600 299 aaKnown RBP12.32□□□□□ -0.44
CLN3-249ENST00000636685 ZG16BQ96DA0 208 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 MTERF3Q96E29 417 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 ZNF75AQ96N20 296 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 ATP6V1HQ9UI12 483 aa12.32□□□□□ -0.44
CLN3-249ENST00000636685 ISPDA4D126 451 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 AK1P00568 194 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 CRYBA1P05813 215 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 CHRM4P08173 479 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 ZNF12P17014 697 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 MATN1P21941 496 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 CLDN17P56750 224 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 RPL38P63173 70 aaKnown RBP12.31□□□□□ -0.44
CLN3-249ENST00000636685 FAM189A2Q15884 450 aa12.31□□□□□ -0.44
CLN3-249ENST00000636685 GSG1Q2KHT4 349 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms