RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 HMGN2P05204 90 aaKnown RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 SLC25A4P12235 298 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF3P17036 446 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 CDK2P24941 298 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 DDX6P26196 483 aaKnown RBP eCLIP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 TEAD1P28347 426 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 PTGFRP43088 359 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 NCBP2P52298 156 aaKnown RBP eCLIP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 PRKAG1P54619 331 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 PCGF3Q3KNV8 242 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 RNF212Q495C1 297 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 LCTLQ6UWM7 567 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 TMPRSS9Q7Z410 1059 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 FAM129CQ86XR2 697 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 RNF113BQ8IZP6 322 aaKnown RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 LILRA3Q8N6C8 439 aaPredicted RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 RASGEF1AQ8N9B8 481 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 OR1S2Q8NGQ3 325 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 RXFP4Q8TDU9 374 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 ZFPM2Q8WW38 1151 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 SEC11CQ9BY50 192 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 QRSL1Q9H0R6 528 aaKnown RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 ASF1BQ9NVP2 202 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 SIDT1Q9NXL6 827 aaKnown RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 COMMD9Q9P000 198 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 MTFP1Q9UDX5 166 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 TNFSF18Q9UNG2 199 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 PLEKHA6Q9Y2H5 1048 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 GPR55Q9Y2T6 319 aaPredicted RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 MEX3AA1L020 520 aaKnown RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 RTCAO00442 366 aaKnown RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 MAN2B1O00754 1011 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 UBE2CO00762 179 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 CTNSO60931 367 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 MOSPD3O75425 235 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 HTR3BO95264 441 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 NTN1O95631 604 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 POP4O95707 220 aaKnown RBP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 ADCYAP1P18509 176 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 SLC2A5P22732 501 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 PDHA2P29803 388 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 SCAND1P57086 179 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 RPS11P62280 158 aaKnown RBP eCLIP9.94□□□□□ -0.82
UPF3A-212ENST00000619079 FOXK2Q01167 660 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 SMCO1Q147U7 214 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 IRF4Q15306 451 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 RAB12Q6IQ22 244 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 USP53Q70EK8 1073 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 SLC16A13Q7RTY0 426 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 VRK2Q86Y07 508 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 PELI1Q96FA3 418 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 CNTNAP3BQ96NU0 1288 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 F2RL3Q96RI0 385 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 BBS4Q96RK4 519 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 MYADMQ96S97 322 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 AIF1LQ9BQI0 150 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 SLC46A2Q9BY10 475 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 ZDHHC6Q9H6R6 413 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 NOX4Q9NPH5 578 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 GDE1Q9NZC3 331 aa9.94□□□□□ -0.82
UPF3A-212ENST00000619079 OR2T7P0C7T2 308 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 AKAIN1P0CW23 69 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 PRR5P85299 388 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 C22orf39Q6P5X5 142 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 ENPP7Q6UWV6 458 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF813Q6ZN06 617 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 ACOT7LQ6ZUV0 252 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 CMTM8Q8IZV2 173 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 ZNF433Q8N7K0 673 aaPredicted RBP9.93□□□□□ -0.82
UPF3A-212ENST00000619079 POMGNT2Q8NAT1 580 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 OR4C16Q8NGL9 310 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 OR2T27Q8NH04 317 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 OR4C6Q8NH72 309 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SLC22A12Q96S37 553 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 VRK1Q99986 396 aaPredicted RBP9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SLITRK2Q9H156 845 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 C1orf198Q9H425 327 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 EXO5Q9H790 373 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 PELI2Q9HAT8 420 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SLC22A11Q9NSA0 550 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SLC7A7Q9UM01 511 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 OR10H1Q9Y4A9 318 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 C5orf52A6NGY3 159 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 OR5H14A6NHG9 310 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 C1orf196B1AJZ1 125 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 C2CD4DB7Z1M9 353 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 BNIP3LO60238 219 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SLC25A12O75746 678 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 GLSO94925 669 aaPredicted RBP9.93□□□□□ -0.82
UPF3A-212ENST00000619079 MELTFP08582 738 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 GKN3PP0CG01 181 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 LAMP2P13473 410 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 ABOP16442 354 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 EDNRAP25101 427 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 PBLDP30039 288 aaPredicted RBP9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SNRPEP62304 92 aaKnown RBP9.93□□□□□ -0.82
UPF3A-212ENST00000619079 CXADRP78310 365 aa9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SSBP1Q04837 148 aaKnown RBP9.93□□□□□ -0.82
UPF3A-212ENST00000619079 SRSF4Q08170 494 aaKnown RBP9.93□□□□□ -0.82
UPF3A-212ENST00000619079 PEA15Q15121 130 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms