RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 HAVCR2Q8TDQ0 301 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 SMIM4Q8WVI0 70 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 SCAMP4Q969E2 229 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 ISOC2Q96AB3 205 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 TM4SF18Q96CE8 201 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 NRSN2Q9GZP1 204 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 MRPL15Q9P015 296 aaKnown RBP9.42□□□□□ -0.9
VPS39-214ENST00000614932 WNT6Q9Y6F9 365 aa9.42□□□□□ -0.9
VPS39-214ENST00000614932 TBC1D3DA0A087WVF3 549 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TBC1D3IA0A087WXS9 549 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TBC1D3EA0A087X179 549 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TBC1D3KA0A087X1G2 549 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 A0A1W2PPQ1 181 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 GSAPA4D1B5 854 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TBC1D3FA6NER0 549 aaPredicted RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 A6NJY4 79 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TMEM229AB2RXF0 380 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TBC1D3LB9A6J9 549 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 M0R143 59 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 EFCAB14O75071 495 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 OR2F2O95006 317 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 IGSF6O95976 241 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 CELP19835 753 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 GDI1P31150 447 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 SOX18P35713 384 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 MECP2P51608 486 aaKnown RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 SELENOWP63302 87 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 INSM1Q01101 510 aaPredicted RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 OR2F1Q13607 317 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 IL10RAQ13651 578 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 ZNF345Q14585 488 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 ARHGAP19Q14CB8 494 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 ELAVL1Q15717 326 aaKnown RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 C14orf28Q4W4Y0 310 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 XKR6Q5GH73 641 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 DCAF12L2Q5VW00 463 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 NKAIN2Q5VXU1 208 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TBC1D3CQ6IPX1 549 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TSSK4Q6SA08 328 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 WDR53Q7Z5U6 358 aaPredicted RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 SLC30A8Q8IWU4 369 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TBC1D3Q8IZP1 549 aaPredicted RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 OR2AK2Q8NG84 335 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 OR2AP1Q8NGE2 309 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 PARD6GQ9BYG4 376 aaPredicted RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 FKRPQ9H9S5 495 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 DOK5Q9P104 306 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 FAM96BQ9Y3D0 163 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 UPK3BL1B0FP48 263 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 UPK3BL2E5RIL1 263 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 PHOX2AO14813 284 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 CTDSPLO15194 276 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TAPBPO15533 448 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 C1QCP02747 245 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 OSMP13725 252 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 TNFRSF1BP20333 461 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 GALP22466 123 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 EGR3Q06889 387 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 GTF2H2Q13888 395 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 ACTBL2Q562R1 376 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 HIST2H3PS2Q5TEC6 136 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 GTF2H2CQ6P1K8 395 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 CFAP161Q6P656 301 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 NRROSQ86YC3 692 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 THNSL2Q86YJ6 484 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 RNF175Q8N4F7 328 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 Q8NFD4 153 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 OR4F15Q8NGB8 312 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 OR52B4Q8NGK2 314 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 ZBP1Q9H171 429 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 NMNAT1Q9HAN9 279 aaPredicted RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 TMEM27Q9HBJ8 222 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 FGF20Q9NP95 211 aaPredicted RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 KRCC1Q9NPI7 259 aaPredicted RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 ACER3Q9NUN7 267 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 ASIC5Q9NY37 505 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 CALML5Q9NZT1 146 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 IL17BQ9UHF5 180 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 EXOSC1Q9Y3B2 195 aaKnown RBP9.41□□□□□ -0.9
VPS39-214ENST00000614932 IRGMA1A4Y4 181 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 ARRDC5A6NEK1 342 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 SYT5O00445 386 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 NXPH2O95156 264 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 B3GALT4O96024 378 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 SFTPBP07988 381 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 SPARCP09486 303 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 FGF7P21781 194 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 ACRV1P26436 265 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 SERPINA4P29622 427 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 THBS4P35443 961 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 CDKN1BP46527 198 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 LIMS1P48059 325 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 DIO1P49895 249 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 CCR8P51685 355 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 SLC10A1Q14973 349 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 CPSF6Q16630 551 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS39-214ENST00000614932 ISXQ2M1V0 245 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 IFI44LQ53G44 452 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 SFXN4Q6P4A7 337 aa9.41□□□□□ -0.9
VPS39-214ENST00000614932 SERPINA13PQ6UXR4 307 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms