RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 P2RY2P41231 377 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 EEF1A1P68104 462 aaKnown RBP16.82■□□□□ 0.28
UPF1-210ENST00000600689 RNF44Q7L0R7 432 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 RTL10Q7L3V2 364 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 HIST3H2AQ7L7L0 130 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 RD3Q7Z3Z2 195 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 OR10K1Q8NGX5 313 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 HIST1H2ACQ93077 130 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 MRPS24Q96EL2 167 aaKnown RBP16.82■□□□□ 0.28
UPF1-210ENST00000600689 MS4A4EQ96PG1 132 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 NPAS1Q99742 590 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 LDAHQ9H6V9 325 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 NCDNQ9UBB6 729 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 A8MXK9 166 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 ZNF879B4DU55 563 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 F5H5P2 479 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 GSTZ1O43708 216 aaPredicted RBP16.82■□□□□ 0.28
UPF1-210ENST00000600689 PRKNO60260 465 aaPredicted RBP16.82■□□□□ 0.28
UPF1-210ENST00000600689 ADAM11O75078 769 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 PPP3CBP16298 524 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 GABRA3P34903 492 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 TAS2R20P59543 309 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 TRA2BP62995 288 aaKnown RBP16.82■□□□□ 0.28
UPF1-210ENST00000600689 ARHGAP19Q14CB8 494 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 DCST2Q5T1A1 773 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 ZNF660Q6AZW8 331 aaPredicted RBP16.82■□□□□ 0.28
UPF1-210ENST00000600689 PSRC1Q6PGN9 363 aaPredicted RBP16.82■□□□□ 0.28
UPF1-210ENST00000600689 TMIEQ8NEW7 156 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 OR51S1Q8NGJ8 323 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 JAM3Q9BX67 310 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 HPF1Q9NWY4 346 aa16.82■□□□□ 0.28
UPF1-210ENST00000600689 OR2M5A3KFT3 312 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 KCNAB3O43448 404 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 ECDO95905 644 aaPredicted RBP16.81■□□□□ 0.28
UPF1-210ENST00000600689 DPP4P27487 766 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 PON3Q15166 354 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 FAM71CQ8NEG0 241 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 HERVK_113Q902F9 699 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.81■□□□□ 0.28
UPF1-210ENST00000600689 TMEM185BQ9H7F4 350 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 TMEM27Q9HBJ8 222 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 AKAP7Q9P0M2 348 aaPredicted RBP16.81■□□□□ 0.28
UPF1-210ENST00000600689 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.81■□□□□ 0.28
UPF1-210ENST00000600689 TBC1D3EA0A087X179 549 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 PRR32B1ATL7 298 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 D6RAR5 112 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 C5orf67F2Z3F1 127 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 AIPO00170 330 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 GMFGO60234 142 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 IFNGP01579 166 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 CPMP14384 443 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 VASPP50552 380 aaPredicted RBP16.81■□□□□ 0.28
UPF1-210ENST00000600689 ART1P52961 327 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 TMEM35AQ53FP2 167 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 PWWP2BQ6NUJ5 590 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 ERN2Q76MJ5 926 aaKnown RBP16.81■□□□□ 0.28
UPF1-210ENST00000600689 OVCH2Q7RTZ1 564 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 OR4C16Q8NGL9 310 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 NR4A3Q92570 626 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 FOXN4Q96NZ1 517 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 INPP5EQ9NRR6 644 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 GTF2F2P13984 249 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 SLC2A5P22732 501 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 BAMBIQ13145 260 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 IKZF1Q13422 519 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 CLVS2Q5SYC1 327 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 TANGO2Q6ICL3 276 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 OR2L3Q8NG85 312 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 SEC22AQ96IW7 307 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 Q96M85 177 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 TMEM106CQ9BVX2 250 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 ZNF768Q9H5H4 540 aaKnown RBP16.81■□□□□ 0.28
UPF1-210ENST00000600689 EXO5Q9H790 373 aa16.81■□□□□ 0.28
UPF1-210ENST00000600689 ZMAT3Q9HA38 289 aaKnown RBP16.81■□□□□ 0.28
UPF1-210ENST00000600689 MDC1Q14676 2089 aaKnown RBP16.81■□□□□ 0.28
UPF1-210ENST00000600689 CEP290O15078 2479 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 NUP210Q8TEM1 1887 aaPredicted RBP16.8■□□□□ 0.28
UPF1-210ENST00000600689 A0A1B0GWA3 101 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 ANKRD20A5PA0PJZ0 165 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 STARP49675 285 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 DLX5P56178 289 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 ACTC1P68032 377 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 ACTA1P68133 377 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 MC2RQ01718 297 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 GPM6BQ13491 265 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 ZNF169Q14929 603 aaPredicted RBP16.8■□□□□ 0.28
UPF1-210ENST00000600689 OR10AC1Q8NH08 325 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 SMARCD2Q92925 531 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 MOAP1Q96BY2 351 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 TRPV4Q9HBA0 871 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 EXOSC3Q9NQT5 275 aaKnown RBP16.8■□□□□ 0.28
UPF1-210ENST00000600689 IKZF2Q9UKS7 526 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 OR2W5A6NFC9 320 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 H7C1C5 153 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 CCSO14618 274 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 FGF2P09038 288 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 ERGP11308 486 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 LCN6P62502 163 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 CSRP2Q16527 193 aa16.8■□□□□ 0.28
UPF1-210ENST00000600689 ALG10BQ5I7T1 473 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms