RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 AP1ARQ63HQ0 302 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF621Q6ZSS3 439 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF771Q7L3S4 317 aaPredicted RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 MDP1Q86V88 176 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 LRP11Q86VZ4 500 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 LINC01356Q8N9X3 169 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 SEMA6DQ8NFY4 1073 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 CKAP2Q8WWK9 683 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 PMM1Q92871 262 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 KTI12Q96EK9 354 aaPredicted RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 SYT3Q9BQG1 590 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 MRPL37Q9BZE1 423 aaKnown RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 RAB1BQ9H0U4 201 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 CRLF2Q9HC73 371 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 PNPOQ9NVS9 261 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 ASIC5Q9NY37 505 aa7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 MYEF2Q9P2K5 600 aaKnown RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 CRNNQ9UBG3 495 aaPredicted RBP7.46□□□□□ -1.22
SHKBP1-220ENST00000599716 WNK2Q9Y3S1 2297 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 ARHGAP32A7KAX9 2087 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 ARPC4-TTLL3A0A0A6YYG9 625 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 AGR2O95994 175 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 IGKV3-15P01624 115 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 HLA-HP01893 362 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 BCHEP06276 602 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 PNMTP11086 282 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 NCF2P19878 526 aaPredicted RBP7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 COL8A2P25067 703 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 GIFP27352 417 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 S100A3P33764 101 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 ETV4P43268 484 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 AQP5P55064 265 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 PIGFQ07326 219 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 MAD2L1Q13257 205 aaPredicted RBP7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 RIN1Q13671 783 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 CEACAM16Q2WEN9 425 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 ALKBH6Q3KRA9 238 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 ELFN2Q5R3F8 820 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 ANXA8L1Q5VT79 327 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 LRRC74BQ6ZQY2 392 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 SERPINA11Q86U17 422 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 NUDCD3Q8IVD9 361 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF786Q8N393 782 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 OR52P1PQ8NH57 321 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 CLDND2Q8NHS1 167 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 UBASH3BQ8TF42 649 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 TRNT1Q96Q11 434 aaKnown RBP7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 PANX1Q96RD7 426 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 SORT1Q99523 831 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 EMC6Q9BV81 110 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 PTDSS2Q9BVG9 487 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 SF3B5Q9BWJ5 86 aaKnown RBP7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 TAPBPLQ9BX59 468 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 RSPO3Q9BXY4 272 aaPredicted RBP7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 GPR35Q9HC97 309 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 TREM2Q9NZC2 230 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 B3GAT1Q9P2W7 334 aa7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF443Q9Y2A4 671 aaPredicted RBP7.45□□□□□ -1.22
SHKBP1-220ENST00000599716 CDHR4A6H8M9 788 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 A8MVM7 634 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 FTCDNL1E5RQL4 147 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 M0R3G1 203 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 TYROBPO43914 113 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 NCR1O76036 304 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 PDE5AO76074 875 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 SNUPNO95149 360 aaKnown RBP7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 AVPP01185 164 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 DBIP07108 87 aaKnown RBP7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 GUSBP08236 651 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 PATE4P0C8F1 98 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 HLA-DOBP13765 273 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 BGNP21810 368 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 FKBP2P26885 142 aaKnown RBP7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 MVDP53602 400 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 ABCE1P61221 599 aaKnown RBP7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 ACTG1P63261 375 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 EGR4Q05215 589 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 IFFO1Q0D2I5 559 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 DAG1Q14118 895 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 WBP2NLQ6ICG8 309 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 C1orf229Q6ZS94 237 aaPredicted RBP7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 ABHD12BQ7Z5M8 362 aaPredicted RBP7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 COMTD1Q86VU5 262 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 CMIPQ8IY22 773 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 PEX5LQ8IYB4 626 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 LRRC34Q8IZ02 419 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 ZNF540Q8NDQ6 660 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 NUP37Q8NFH4 326 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 OR4F15Q8NGB8 312 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 YIPF5Q969M3 257 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 VPS33AQ96AX1 596 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 TESCQ96BS2 214 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 CCDC115Q96NT0 180 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 OR52E6Q96RD3 313 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 WDR55Q9H6Y2 383 aaPredicted RBP7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 MTHFD2LQ9H903 347 aaPredicted RBP7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 MYOZ1Q9NP98 299 aaPredicted RBP7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 HIF1ANQ9NWT6 349 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 LGALS13Q9UHV8 139 aa7.44□□□□□ -1.22
SHKBP1-220ENST00000599716 RYR1P21817 5038 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms