RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 POU2F1P14859 743 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 MAKP20794 623 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 TIMP3P35625 211 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 GPR4P46093 362 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 RPS5P46782 204 aaKnown RBP13.4□□□□□ -0.26
TRIM28-207ENST00000597136 GSSP48637 474 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 CLK1P49759 484 aaKnown RBP13.4□□□□□ -0.26
TRIM28-207ENST00000597136 MTFR2Q6P444 385 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 TMPRSS11FQ6ZWK6 438 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 GALNT4Q8N4A0 578 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 PACRGLQ8N7B6 248 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 MBD3L2Q8NHZ7 208 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-207ENST00000597136 GNPDA2Q8TDQ7 276 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 ROBO4Q8WZ75 1007 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 WNT2BQ93097 391 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 GTPBP3Q969Y2 492 aaKnown RBP13.4□□□□□ -0.26
TRIM28-207ENST00000597136 INTS12Q96CB8 462 aaKnown RBP13.4□□□□□ -0.26
TRIM28-207ENST00000597136 NIPSNAP1Q9BPW8 284 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 PTDSS2Q9BVG9 487 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 UCK2Q9BZX2 261 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 ZNF556Q9HAH1 456 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 C8orf4Q9NR00 106 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 KIF17Q9P2E2 1029 aa13.4□□□□□ -0.26
TRIM28-207ENST00000597136 TMEFF2Q9UIK5 374 aaPredicted RBP13.4□□□□□ -0.26
TRIM28-207ENST00000597136 ASH1LQ9NR48 2969 aaKnown RBP13.39□□□□□ -0.27
TRIM28-207ENST00000597136 A1L4Q6 167 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 SLC22A20A6NK97 555 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 CDC42EP2O14613 210 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 CH25HO95992 272 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 HPRP00739 348 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 FPR3P25089 353 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 RPS3AP61247 264 aaKnown RBP13.39□□□□□ -0.27
TRIM28-207ENST00000597136 TSPAN31Q12999 210 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 MYBPHQ13203 477 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 SF3B4Q15427 424 aaKnown RBP eCLIP13.39□□□□□ -0.271e-8■■■■□ 21.4
TRIM28-207ENST00000597136 RIPPLY2Q5TAB7 128 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 CD300LDQ6UXZ3 194 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 GCNT2Q8N0V5 402 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 MAGEE2Q8TD90 523 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-207ENST00000597136 SGTBQ96EQ0 304 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 MOGAT1Q96PD6 335 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 VCX3BQ9H321 246 aa13.39□□□□□ -0.27
TRIM28-207ENST00000597136 NBPF19A0A087WUL8 3843 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 IGHV3-15A0A0B4J1V0 119 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 LRRN3E7EW58 273 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 RCBTB2O95199 551 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 AHSA1O95433 338 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 CLDN1O95832 211 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 IL2RAP01589 272 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 BGLAPP02818 100 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 IMPDH2P12268 514 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 ENPP1P22413 925 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 IGFBP5P24593 272 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 VHLP40337 213 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 SMSP52788 366 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 LTBQ06643 244 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 COX10Q12887 443 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 ZNF74Q16587 644 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 FAM69AQ5T7M9 428 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 SLC46A3Q7Z3Q1 461 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 ZNF808Q8N4W9 903 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-207ENST00000597136 C10orf53Q8N6V4 93 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 OR6S1Q8NH40 331 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 LIPHQ8WWY8 451 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 DNAJC9Q8WXX5 260 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 PSMG3-AS1Q96PY0 264 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 VCXQ9H320 206 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 PAPOLBQ9NRJ5 636 aaKnown RBP13.38□□□□□ -0.27
TRIM28-207ENST00000597136 KRT84Q9NSB2 600 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 HDGFL3Q9Y3E1 203 aa13.38□□□□□ -0.27
TRIM28-207ENST00000597136 HEATR1Q9H583 2144 aaKnown RBP13.38□□□□□ -0.27
TRIM28-207ENST00000597136 GJE1A6NN92 205 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 EFCAB9A8MZ26 197 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 FTCDNL1E5RQL4 147 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 SULT2B1O00204 365 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 OR2T1O43869 369 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 MITFO75030 526 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-207ENST00000597136 OR7A10O76100 309 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 SAGP10523 405 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-207ENST00000597136 FUT1P19526 365 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 GSTM3P21266 225 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 IDUAP35475 653 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 DIO1P49895 249 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 PDSS1Q5T2R2 415 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 XKRXQ6PP77 449 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 KLHL17Q6TDP4 642 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 TMPPEQ6ZT21 453 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 P4HA3Q7Z4N8 544 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 GALNT5Q7Z7M9 940 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 LRRC17Q8N6Y2 441 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 LILRB4Q8NHJ6 448 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 MFSD8Q8NHS3 518 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 NANSQ9NR45 359 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 COQ3Q9NZJ6 369 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 CLEC4AQ9UMR7 237 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 TRAPPC4Q9Y296 219 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 POFUT2Q9Y2G5 429 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 NKX2-6A6NCS4 301 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 UNC119BA6NIH7 251 aa13.37□□□□□ -0.27
TRIM28-207ENST00000597136 LIPT2A6NK58 231 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms