RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 RELTQ969Z4 430 aa13.23□□□□□ -0.29
SHKBP1-211ENST00000595945 IFT27Q9BW83 186 aa13.23□□□□□ -0.29
SHKBP1-211ENST00000595945 PRRG3Q9BZD7 231 aa13.23□□□□□ -0.29
SHKBP1-211ENST00000595945 SLC6A15Q9H2J7 730 aa13.23□□□□□ -0.29
SHKBP1-211ENST00000595945 IMPAD1Q9NX62 359 aa13.23□□□□□ -0.29
SHKBP1-211ENST00000595945 TRIM64A6NGJ6 449 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 BLOC1S5-TXNDC5H3BN57 136 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 IMPA2O14732 288 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 DNPH1O43598 174 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 IDH3BO43837 385 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 IGHG3P01860 377 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 LYNP07948 512 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 CD14P08571 375 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 STARP49675 285 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 DIO1P49895 249 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 LHX2P50458 406 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 CLDN15P56746 228 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 CLDN20P56880 219 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 OR2B6P58173 313 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 CXCR4P61073 352 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 SLC35A1P78382 337 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 SNAPC1Q16533 368 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 OCLNQ16625 522 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 ZNF362Q5T0B9 420 aaPredicted RBP13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 RPUSD3Q6P087 351 aaKnown RBP13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 NHLRC1Q6VVB1 395 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 ESPNLQ6ZVH7 1005 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 PTCHD4Q6ZW05 846 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 FAM122BQ7Z309 247 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 IGFN1Q86VF2 1251 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 TCEANCQ8N8B7 351 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 SLC38A2Q96QD8 506 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 KATNB1Q9BVA0 655 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 TEX12Q9BXU0 123 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 NDEL1Q9GZM8 345 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 ZNF696Q9H7X3 374 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 CMC2Q9NRP2 79 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 RASSF1Q9NS23 344 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 PLCXD1Q9NUJ7 323 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 LHX6Q9UPM6 363 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 TP53TG5Q9Y2B4 290 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 B3GALT5Q9Y2C3 310 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 IER3IP1Q9Y5U9 82 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 LIPGQ9Y5X9 500 aa13.22□□□□□ -0.29
SHKBP1-211ENST00000595945 ATRXP46100 2492 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 A0A1W2PNV4 684 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 ZNF814B7Z6K7 855 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 SULT2B1O00204 365 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 SLC2A10O95528 541 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 IGHMP01871 453 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 ADORA3P0DMS8 318 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 POU3F2P20265 443 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 RPL4P36578 427 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 AGFG1P52594 562 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 SUCLG1P53597 346 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 MLLT10P55197 1068 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 CLDN18P56856 261 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 CTXN1P60606 82 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 ERVK-25P63136 954 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 H3F3AP84243 136 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 TOP3AQ13472 1001 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 BCL2A1Q16548 175 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 KCTD21Q4G0X4 260 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 RBM48Q5RL73 367 aaKnown RBP13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 ARHGAP11AQ6P4F7 1023 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 PAQR6Q6TCH4 344 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 SIAH3Q8IW03 269 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 ZNF786Q8N393 782 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 TMEM99Q8N816 258 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 NEIL3Q8TAT5 605 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 SMPDL3BQ92485 455 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 ERMAPQ96PL5 475 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 TAAR6Q96RI8 345 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 IL4I1Q96RQ9 567 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 DDOQ99489 341 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 FN3KQ9H479 309 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 INIPQ9NRY2 104 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 MYRFQ9Y2G1 1151 aa13.21□□□□□ -0.29
SHKBP1-211ENST00000595945 MED12LQ86YW9 2145 aa13.21□□□□□ -0.3
SHKBP1-211ENST00000595945 LOC102725191A0A1B0GVB3 256 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 A0A1B0GVC2 190 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 MAGEA13PA6NCF6 341 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 NPIPB13A6NJU9 1138 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 AQP7P3A6NL99 342 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 KDM4EB2RXH2 506 aaPredicted RBP13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 NPIPB4C9JG80 1138 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 H0YC42 278 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 SLC1A7O00341 560 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 TNFSF11O14788 317 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 TLX2O43763 284 aaPredicted RBP13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 AKR7A3O95154 331 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 TNFAIP8O95379 198 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 ACTL6AO96019 429 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 F13BP05160 661 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 RPSAP08865 295 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 CCDC159P0C7I6 412 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 ZNF708P17019 499 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 ZNF24P17028 368 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 KLK2P20151 261 aa13.2□□□□□ -0.3
SHKBP1-211ENST00000595945 GTF2E2P29084 291 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms