RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 MMP27Q9H306 513 aa11.96□□□□□ -0.5
VRK3-205ENST00000593919 CHCHD3Q9NX63 227 aaKnown RBP11.96□□□□□ -0.5
VRK3-205ENST00000593919 CCDC59Q9P031 241 aaKnown RBP11.96□□□□□ -0.5
VRK3-205ENST00000593919 DIMT1Q9UNQ2 313 aaKnown RBP11.96□□□□□ -0.5
VRK3-205ENST00000593919 PRRC2CQ9Y520 2896 aaKnown RBP11.96□□□□□ -0.5
VRK3-205ENST00000593919 A0A0G2JMM0 328 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 A0A1W2PPB8 328 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 A0A1W2PRS3 328 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 TMEM72A0PK05 275 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 ZC3H12DA2A288 527 aaKnown RBP11.95□□□□□ -0.5
VRK3-205ENST00000593919 KIR3DP1A8MWS1 328 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 SHISA8B8ZZ34 492 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 SNPHO15079 494 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 PTP4A3O75365 173 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 SLC25A12O75746 678 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 P04436 131 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 RRADP55042 308 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 DLX5P56178 289 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 C1DQ13901 141 aaKnown RBP11.95□□□□□ -0.5
VRK3-205ENST00000593919 ZNF74Q16587 644 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 SMARCD3Q6STE5 483 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 THSD4Q6ZMP0 1018 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 LINC00696Q6ZRV3 163 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 SHFQ7M4L6 423 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 ANKK1Q8NFD2 765 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 OR52L1Q8NGH7 329 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 C1GALT1C1Q96EU7 318 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 DNAJA3Q96EY1 480 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 MOGAT1Q96PD6 335 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 TNFRSF13CQ96RJ3 184 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 CDADC1Q9BWV3 514 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 PRRG3Q9BZD7 231 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 PTGES2Q9H7Z7 377 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 MCCC2Q9HCC0 563 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 SACM1LQ9NTJ5 587 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 LRFN1Q9P244 771 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 ABI3Q9P2A4 366 aa11.95□□□□□ -0.5
VRK3-205ENST00000593919 URB1O60287 2271 aaKnown RBP11.94□□□□□ -0.5
VRK3-205ENST00000593919 A6NL46 340 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 PRODHO43272 600 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 HCN1O60741 890 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 NEURL1O76050 574 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 OR7A10O76100 309 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 RCBTB2O95199 551 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 BMP7P18075 431 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 TCEA1P23193 301 aaKnown RBP11.94□□□□□ -0.5
VRK3-205ENST00000593919 CD96P40200 585 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 RPS5P46782 204 aaKnown RBP11.94□□□□□ -0.5
VRK3-205ENST00000593919 SLC9A3P48764 834 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 DNASE1L1P49184 302 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 IFITM3Q01628 133 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.94□□□□□ -0.5
VRK3-205ENST00000593919 TRIM16LQ309B1 348 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 PGGHGQ32M88 737 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 GXYLT1Q4G148 440 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 KLHL22Q53GT1 634 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 C1QL3Q5VWW1 255 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 SPINK14Q6IE38 97 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 RPL13AP3Q6NVV1 102 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 TUBA3EQ6PEY2 450 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 PROKR2Q8NFJ6 384 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 OR2T33Q8NG76 320 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 OR1J4Q8NGS1 313 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 TAAR8Q969N4 342 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 JSRP1Q96MG2 331 aaPredicted RBP11.94□□□□□ -0.5
VRK3-205ENST00000593919 GNRHR2Q96P88 292 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 OR11A1Q9GZK7 315 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 UBQLN3Q9H347 655 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 NANSQ9NR45 359 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 TBCCD1Q9NVR7 557 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 CHRNA9Q9UGM1 479 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 WASF3Q9UPY6 502 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 ZNF337Q9Y3M9 751 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 PCDHGB6Q9Y5F9 930 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 NPIPB7O75200 414 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 SNX4O95219 450 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 WDPCPO95876 746 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 MYL12AP19105 171 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 CASRP41180 1078 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 APOBEC1P41238 236 aaKnown RBP11.94□□□□□ -0.5
VRK3-205ENST00000593919 MTNR1AP48039 350 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 CDC20Q12834 499 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 SLC25A53Q5H9E4 307 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 LIPKQ5VXJ0 399 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 RNLSQ5VYX0 342 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 C10orf53Q8N6V4 93 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 POC1BQ8TC44 478 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 TMEM41AQ96HV5 264 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 MRGPRX4Q96LA9 322 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 SIGLEC12Q96PQ1 595 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 UTP23Q9BRU9 249 aaKnown RBP11.94□□□□□ -0.5
VRK3-205ENST00000593919 TEX12Q9BXU0 123 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 RACGAP1Q9H0H5 632 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 DEPPQ9NTK1 212 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 POLHQ9Y253 713 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 BOD1L1Q8NFC6 3051 aa11.94□□□□□ -0.5
VRK3-205ENST00000593919 ANKRD11Q6UB99 2663 aaPredicted RBP11.93□□□□□ -0.5
VRK3-205ENST00000593919 TRAV36DV7A0A075B6V5 113 aa11.93□□□□□ -0.5
VRK3-205ENST00000593919 PNMA8CA0A1B0GUJ8 204 aa11.93□□□□□ -0.5
VRK3-205ENST00000593919 HTR3EA5X5Y0 456 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms