RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 HAGHLQ6PII5 290 aaPredicted RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 SLC35D2Q76EJ3 337 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 SLC16A14Q7RTX9 510 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 SLCO6A1Q86UG4 719 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 OLAHQ9NV23 265 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 A0A075B6Q4 140 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 OR6C70A6NIJ9 312 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 F5H5K5 113 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 INMTO95050 263 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 TFPTP0C1Z6 253 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 SFTPCP11686 197 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 BMP4P12644 408 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 IRF2P14316 349 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 EIF2B1Q14232 305 aaKnown RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 PRICKLE4Q2TBC4 344 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 ZNF628Q5EBL2 1059 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 OGFRL1Q5TC84 451 aaPredicted RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 MRM1Q6IN84 353 aaKnown RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 NUBPLQ8TB37 319 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 C10orf90Q96M02 699 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 TCEAL7Q9BRU2 100 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 GRIP1Q9Y3R0 1128 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 PRSS44E7EML9 344 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 FAUP35544 74 aaKnown RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 BIDP55957 195 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 GLYR1Q49A26 553 aaPredicted RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 MRPL21Q7Z2W9 205 aaKnown RBP9.01□□□□□ -0.97
LIG3-216ENST00000593099 ZBTB8AQ96BR9 441 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 PRR14Q9BWN1 585 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 SNTG1Q9NSN8 517 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 SIRT5Q9NXA8 310 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 DHDHQ9UQ10 334 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 PCDHGA6Q9Y5G7 932 aa9.01□□□□□ -0.97
LIG3-216ENST00000593099 TRGV5A0A0B4J1U4 118 aa9□□□□□ -0.97
LIG3-216ENST00000593099 TEX13CA0A0J9YWL9 993 aa9□□□□□ -0.97
LIG3-216ENST00000593099 ISPDA4D126 451 aa9□□□□□ -0.97
LIG3-216ENST00000593099 C12orf71A8MTZ7 269 aa9□□□□□ -0.97
LIG3-216ENST00000593099 FOXS1O43638 330 aa9□□□□□ -0.97
LIG3-216ENST00000593099 GDF9O60383 454 aa9□□□□□ -0.97
LIG3-216ENST00000593099 ENTPD6O75354 484 aa9□□□□□ -0.97
LIG3-216ENST00000593099 WISP3O95389 354 aaPredicted RBP9□□□□□ -0.97
LIG3-216ENST00000593099 ITGB2P05107 769 aa9□□□□□ -0.97
LIG3-216ENST00000593099 CD14P08571 375 aa9□□□□□ -0.97
LIG3-216ENST00000593099 CDH15P55291 814 aa9□□□□□ -0.97
LIG3-216ENST00000593099 DSCR4P56555 118 aaPredicted RBP9□□□□□ -0.97
LIG3-216ENST00000593099 IDNKQ5T6J7 187 aa9□□□□□ -0.97
LIG3-216ENST00000593099 BCL2L15Q5TBC7 163 aa9□□□□□ -0.97
LIG3-216ENST00000593099 NAXEQ8NCW5 288 aa9□□□□□ -0.97
LIG3-216ENST00000593099 OR11G2Q8NGC1 345 aa9□□□□□ -0.97
LIG3-216ENST00000593099 HCAR1Q9BXC0 346 aa9□□□□□ -0.97
LIG3-216ENST00000593099 TVP23AA6NH52 213 aa9□□□□□ -0.97
LIG3-216ENST00000593099 PRODHO43272 600 aa9□□□□□ -0.97
LIG3-216ENST00000593099 CXCL13O43927 109 aa9□□□□□ -0.97
LIG3-216ENST00000593099 ZNF432O94892 652 aa9□□□□□ -0.97
LIG3-216ENST00000593099 IFNA7P01567 189 aa9□□□□□ -0.97
LIG3-216ENST00000593099 GNAO1P09471 354 aa9□□□□□ -0.97
LIG3-216ENST00000593099 GADD45AP24522 165 aa9□□□□□ -0.97
LIG3-216ENST00000593099 ARFRP1Q13795 201 aa9□□□□□ -0.97
LIG3-216ENST00000593099 ZNF773Q6PK81 442 aa9□□□□□ -0.97
LIG3-216ENST00000593099 RIMKLAQ8IXN7 391 aa9□□□□□ -0.97
LIG3-216ENST00000593099 BEST3Q8N1M1 668 aa9□□□□□ -0.97
LIG3-216ENST00000593099 ASCC1Q8N9N2 400 aaKnown RBP9□□□□□ -0.97
LIG3-216ENST00000593099 CPT1CQ8TCG5 803 aa9□□□□□ -0.97
LIG3-216ENST00000593099 RAB2BQ8WUD1 216 aa9□□□□□ -0.97
LIG3-216ENST00000593099 ZNF764Q96H86 408 aaPredicted RBP9□□□□□ -0.97
LIG3-216ENST00000593099 B3GNT4Q9C0J1 378 aa9□□□□□ -0.97
LIG3-216ENST00000593099 ZFP64Q9NPA5 681 aa9□□□□□ -0.97
LIG3-216ENST00000593099 CD300AQ9UGN4 299 aa9□□□□□ -0.97
LIG3-216ENST00000593099 GPR55Q9Y2T6 319 aaPredicted RBP9□□□□□ -0.97
LIG3-216ENST00000593099 TRBV2A0A0J9YWF9 115 aa9□□□□□ -0.97
LIG3-216ENST00000593099 PMS2P1A4D2B8 440 aa9□□□□□ -0.97
LIG3-216ENST00000593099 NUDT19A8MXV4 375 aa9□□□□□ -0.97
LIG3-216ENST00000593099 TBXA2RP21731 343 aa9□□□□□ -0.97
LIG3-216ENST00000593099 ENTPD1P49961 510 aa9□□□□□ -0.97
LIG3-216ENST00000593099 MAP2K6P52564 334 aa9□□□□□ -0.97
LIG3-216ENST00000593099 TRAM1Q15629 374 aa9□□□□□ -0.97
LIG3-216ENST00000593099 DCAF10Q5QP82 559 aa9□□□□□ -0.97
LIG3-216ENST00000593099 SLC35F2Q8IXU6 374 aa9□□□□□ -0.97
LIG3-216ENST00000593099 OR10G3Q8NGC4 313 aa9□□□□□ -0.97
LIG3-216ENST00000593099 OR4N2Q8NGD1 307 aa9□□□□□ -0.97
LIG3-216ENST00000593099 OR5L1Q8NGL2 311 aa9□□□□□ -0.97
LIG3-216ENST00000593099 OR8S1Q8NH09 359 aa9□□□□□ -0.97
LIG3-216ENST00000593099 HAVCR2Q8TDQ0 301 aa9□□□□□ -0.97
LIG3-216ENST00000593099 TMEM255BQ8WV15 326 aa9□□□□□ -0.97
LIG3-216ENST00000593099 TCTEX1D2Q8WW35 142 aa9□□□□□ -0.97
LIG3-216ENST00000593099 DIRAS2Q96HU8 199 aa9□□□□□ -0.97
LIG3-216ENST00000593099 TRIB1Q96RU8 372 aa9□□□□□ -0.97
LIG3-216ENST00000593099 AMBRA1Q9C0C7 1298 aa9□□□□□ -0.97
LIG3-216ENST00000593099 TDRD6O60522 2096 aaKnown RBP9□□□□□ -0.97
LIG3-216ENST00000593099 hCG_1807616A0A1W2PRN6 198 aa8.99□□□□□ -0.97
LIG3-216ENST00000593099 OR5H15A6NDH6 313 aa8.99□□□□□ -0.97
LIG3-216ENST00000593099 AKR7A3O95154 331 aa8.99□□□□□ -0.97
LIG3-216ENST00000593099 FUT4P22083 530 aa8.99□□□□□ -0.97
LIG3-216ENST00000593099 ELK4P28324 431 aa8.99□□□□□ -0.97
LIG3-216ENST00000593099 GLT8D1Q68CQ7 371 aa8.99□□□□□ -0.97
LIG3-216ENST00000593099 TIGD3Q6B0B8 471 aa8.99□□□□□ -0.97
LIG3-216ENST00000593099 FAM131AQ6UXB0 335 aa8.99□□□□□ -0.97
LIG3-216ENST00000593099 UBE3DQ7Z6J8 389 aa8.99□□□□□ -0.97
LIG3-216ENST00000593099 WDSUB1Q8N9V3 476 aa8.99□□□□□ -0.97
LIG3-216ENST00000593099 SETD6Q8TBK2 473 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms