RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 NEUROG3Q9Y4Z2 214 aa2.6□□□□□ -1.99
SMCHD1-209ENST00000583441 IGKV1D-8A0A087WSZ0 117 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 A0A1W2PPE3 182 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 PSMB11A5LHX3 300 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 BTBD17A6NE02 478 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 TRIM64CA6NLI5 447 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 A8MUA0 341 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 E9PBE3 544 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 GFYI3L273 518 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 TOM1O60784 492 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 WBP4O75554 376 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 CIB2O75838 187 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 FGF1P05230 155 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 ATP1B2P14415 290 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 HTR1EP28566 365 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 CD1BP29016 333 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 PBLDP30039 288 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 FDFT1P37268 417 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 VHLP40337 213 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 SUCLG1P53597 346 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 ZNF763Q0D2J5 394 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 BST2Q10589 180 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 PLD1Q13393 1074 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 CYTH1Q15438 398 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 IL17AQ16552 155 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 KCTD21Q4G0X4 260 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 LRRC31Q6UY01 552 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 PAQR7Q86WK9 346 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 ECHDC2Q86YB7 292 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 C6orf223Q8N319 242 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 ACOT4Q8N9L9 421 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 LINC01555Q8NAE3 123 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 SLC2A14Q8TDB8 520 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 DCUN1D4Q92564 292 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 CMTM7Q96FZ5 175 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 ITCHQ96J02 903 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 OXGR1Q96P68 337 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 PLEKHF1Q96S99 279 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 CNN2Q99439 309 aaKnown RBP2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 KCTD14Q9BQ13 255 aaPredicted RBP2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 ACTR6Q9GZN1 396 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 ROGDIQ9GZN7 287 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 MFFQ9GZY8 342 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 PPA2Q9H2U2 334 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 NMRK1Q9NWW6 199 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 RABL2BQ9UNT1 228 aa2.59□□□□□ -1.99
SMCHD1-209ENST00000583441 ATP10AO60312 1499 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 NSG1A0A0A6YYJ2 146 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 DYNC1I1O14576 645 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 SOX15O60248 233 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 SUPT7LO94864 414 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 MMP1P03956 469 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 C2P06681 752 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 ICAM2P13598 275 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 ETS2P15036 469 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 ABOP16442 354 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 ZNF19P17023 458 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 FUT3P21217 361 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 NUP107P57740 925 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 NDPQ00604 133 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 TGFBR3Q03167 851 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 PPP1R7Q15435 360 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 ZNF77Q15935 545 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 NRF1Q16656 503 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 PEX26Q7Z412 305 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 ZNF546Q86UE3 836 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 CDR2LQ86X02 465 aaPredicted RBP2.58□□□□□ -2
SMCHD1-209ENST00000583441 CDH26Q8IXH8 852 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 C11orf53Q8IXP5 236 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 RNF175Q8N4F7 328 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 TPRX1Q8N7U7 411 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 OR9G1Q8NH87 305 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 AKR7LQ8NHP1 331 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 ACOT11Q8WXI4 607 aaPredicted RBP2.58□□□□□ -2
SMCHD1-209ENST00000583441 RASD2Q96D21 266 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 PLEKHA8Q96JA3 519 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 ZIM3Q96PE6 472 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 KCNA7Q96RP8 456 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 TSG101Q99816 390 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 NAT9Q9BTE0 207 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 RIOK2Q9BVS4 552 aaKnown RBP2.58□□□□□ -2
SMCHD1-209ENST00000583441 METTL7AQ9H8H3 244 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 NANOGQ9H9S0 305 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 ETNK2Q9NVF9 386 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 EXD2Q9NVH0 621 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 SLC2A8Q9NY64 477 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 ANAPC11Q9NYG5 84 aa2.58□□□□□ -2
SMCHD1-209ENST00000583441 FAM47DPA6NHR8 397 aa2.57□□□□□ -2
SMCHD1-209ENST00000583441 C12orf71A8MTZ7 269 aa2.57□□□□□ -2
SMCHD1-209ENST00000583441 H0Y9J4 135 aa2.57□□□□□ -2
SMCHD1-209ENST00000583441 AP3B1O00203 1094 aa2.57□□□□□ -2
SMCHD1-209ENST00000583441 HMMRO75330 724 aa2.57□□□□□ -2
SMCHD1-209ENST00000583441 OR7A10O76100 309 aa2.57□□□□□ -2
SMCHD1-209ENST00000583441 TMEM50AO95807 157 aa2.57□□□□□ -2
SMCHD1-209ENST00000583441 TROVE2P10155 538 aaKnown RBP eCLIP2.57□□□□□ -2
SMCHD1-209ENST00000583441 HPGDP15428 266 aa2.57□□□□□ -2
SMCHD1-209ENST00000583441 CD1EP15812 388 aa2.57□□□□□ -2
SMCHD1-209ENST00000583441 ELK1P19419 428 aa2.57□□□□□ -2
SMCHD1-209ENST00000583441 FMO3P31513 532 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms