RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 EGLN3Q9H6Z9 239 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 IL20Q9NYY1 176 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 KLRF1Q9NZS2 232 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 H2AFY2Q9P0M6 372 aaPredicted RBP9.18□□□□□ -0.94
SS18-210ENST00000578700 BAIAP2Q9UQB8 552 aa9.18□□□□□ -0.94
SS18-210ENST00000578700 RPL36Q9Y3U8 105 aaKnown RBP9.18□□□□□ -0.94
SS18-210ENST00000578700 ZNF407Q9C0G0 2248 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 A0A087WUJ7 227 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 KLF4O43474 513 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 TLX2O43763 284 aaPredicted RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 FADS1O60427 444 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 BCAS1O75363 584 aaPredicted RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 WBP4O75554 376 aaKnown RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 OR2J2O76002 312 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 HIST1H2ABP04908 130 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 HOXD4P09016 255 aaPredicted RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 IGFBP2P18065 325 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 MSX1P28360 303 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 SLC6A6P31641 620 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 ALDH3B2P48448 385 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 SUMO3P55854 103 aaPredicted RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 GPR85P60893 370 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 CDK5Q00535 292 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 ZNF117Q03924 483 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 OCLNQ16625 522 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 KLHL22Q53GT1 634 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 CLEC12AQ5QGZ9 265 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 SMARCD3Q6STE5 483 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 ZNF620Q6ZNG0 422 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 RTL4Q6ZR62 310 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 AHSA2Q719I0 299 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 HIST3H2AQ7L7L0 130 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 PRSS48Q7RTY5 328 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 SPARTQ8N0X7 666 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 IQCF1Q8N6M8 205 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 TCEANCQ8N8B7 351 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 OR5M9Q8NGP3 310 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 OR5M3Q8NGP4 307 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 PFN4Q8NHR9 129 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 TMEM163Q8TC26 289 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 ELP5Q8TE02 316 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 FCGR1BQ92637 280 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 HIST1H2ACQ93077 130 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 UBE2FQ969M7 185 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 C3orf49Q96BT1 292 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 IL4I1Q96RQ9 567 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 FOXC2Q99958 501 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 TMEM43Q9BTV4 400 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 IFT27Q9BW83 186 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 METTL7AQ9H8H3 244 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 LIN28AQ9H9Z2 209 aaKnown RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 ZNF226Q9NYT6 803 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 CNOT2Q9NZN8 540 aaKnown RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 ERVK-18Q9QC07 812 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 KCNN3Q9UGI6 736 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 WARS2Q9UGM6 360 aaKnown RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 PSORS1C1Q9UIG5 152 aa9.17□□□□□ -0.94
SS18-210ENST00000578700 ZNF223Q9UK11 482 aaPredicted RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 KLF13Q9Y2Y9 288 aaPredicted RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 YARS2Q9Y2Z4 477 aaKnown RBP9.17□□□□□ -0.94
SS18-210ENST00000578700 FAM221AA4D161 298 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 RIIAD1A6NNX1 92 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 NPIPA2E9PIF3 369 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 NPIPA3F8WFD2 350 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 KLRC4-KLRK1H3BQV0 150 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 GNB5O14775 395 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 LYPD3O95274 346 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 IGF2P01344 180 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 IFNGP01579 166 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 IGFBP1P08833 259 aaPredicted RBP9.16□□□□□ -0.94
SS18-210ENST00000578700 FBXO45P0C2W1 286 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 JUNBP17275 347 aaPredicted RBP9.16□□□□□ -0.94
SS18-210ENST00000578700 MAKP20794 623 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 PAICSP22234 425 aaKnown RBP9.16□□□□□ -0.94
SS18-210ENST00000578700 TACR3P29371 465 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 NOS3P29474 1203 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 GRK5P34947 590 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 SSR4P51571 173 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 POLR2HP52434 150 aaKnown RBP9.16□□□□□ -0.94
SS18-210ENST00000578700 FBXW4P57775 412 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 MLF1P58340 268 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 SLC35A2P78381 396 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 LSM11P83369 360 aaKnown RBP eCLIP9.16□□□□□ -0.94
SS18-210ENST00000578700 PLAURQ03405 335 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 TFF3Q07654 80 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 SMN1Q16637 294 aaKnown RBP9.16□□□□□ -0.94
SS18-210ENST00000578700 PGGHGQ32M88 737 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 ANKDD1AQ495B1 522 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 SLC25A30Q5SVS4 291 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 ZNF585AQ6P3V2 769 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 CBLN3Q6UW01 205 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 C5orf46Q6UWT4 87 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 LINC00114Q6XXX2 140 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 WDR88Q6ZMY6 472 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 ZNF227Q86WZ6 799 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 KIF18BQ86Y91 864 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 DUSP19Q8WTR2 217 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 APH1BQ8WW43 257 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 ASB15Q8WXK1 588 aa9.16□□□□□ -0.94
SS18-210ENST00000578700 SAMD8Q96LT4 415 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms