RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 MBP02144 154 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 GPIP06744 558 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 PRSS2P07478 247 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 ERCC1P07992 297 aaPredicted RBP4.91□□□□□ -1.62
VPS53-219ENST00000576019 SLC2A2P11168 524 aaPredicted RBP4.91□□□□□ -1.62
VPS53-219ENST00000576019 COX6B1P14854 86 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 LIFP15018 202 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 C4BPBP20851 252 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 UGT1A5P35504 534 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 SLC7A2P52569 658 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 DAOAP59103 153 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 RAB11AP62491 216 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 IRF8Q02556 426 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 RAB11BQ15907 218 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 ISXQ2M1V0 245 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 TP53I3Q53FA7 332 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 EOGTQ5NDL2 527 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 SLC22A10Q63ZE4 541 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 SCYL2Q6P3W7 929 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 BTNL3Q6UXE8 466 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 UNQ6126/PRO20091Q6UXV3 157 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 CYS1Q717R9 158 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 LINC00523Q86TU6 105 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 GVQW1Q8N7I0 195 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 DMBX1Q8NFW5 382 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 OR4C5Q8NGB2 326 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 FAM110BQ8TC76 370 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 FBXO25Q8TCJ0 367 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 MITD1Q8WV92 249 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 TADA1Q96BN2 335 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 NRBF2Q96F24 287 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 ADGRG7Q96K78 797 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 IL4I1Q96RQ9 567 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 CPXM1Q96SM3 734 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 FMO2Q99518 471 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 SLC6A7Q99884 636 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 TUBA1CQ9BQE3 449 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 SF3B5Q9BWJ5 86 aaKnown RBP4.91□□□□□ -1.62
VPS53-219ENST00000576019 PAPOLGQ9BWT3 736 aaKnown RBP4.91□□□□□ -1.62
VPS53-219ENST00000576019 SPATA16Q9BXB7 569 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 COMMD4Q9H0A8 199 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 IL25Q9H293 177 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 MTHFD2LQ9H903 347 aaPredicted RBP4.91□□□□□ -1.62
VPS53-219ENST00000576019 POT1Q9NUX5 634 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 MRPL39Q9NYK5 338 aaKnown RBP4.91□□□□□ -1.62
VPS53-219ENST00000576019 FAF1Q9UNN5 650 aaPredicted RBP4.91□□□□□ -1.62
VPS53-219ENST00000576019 ALG6Q9Y672 507 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 RNF215Q9Y6U7 377 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 POLEQ07864 2286 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 ZBED9Q6R2W3 1325 aa4.91□□□□□ -1.62
VPS53-219ENST00000576019 TP53BP1Q12888 1972 aaPredicted RBP4.91□□□□□ -1.62
VPS53-219ENST00000576019 EVPLQ92817 2033 aa4.9□□□□□ -1.62
VPS53-219ENST00000576019 TENM1Q9UKZ4 2725 aa4.9□□□□□ -1.62
VPS53-219ENST00000576019 SONP18583 2426 aaKnown RBP4.9□□□□□ -1.62
VPS53-219ENST00000576019 ZNF840PA6NDX5 716 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 EFCAB7A8K855 629 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 HSBP1L1C9JCN9 74 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 DLGAP1O14490 977 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 CYB561D2O14569 222 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 EIF3HO15372 352 aaKnown RBP eCLIP4.9□□□□□ -1.637e-7■□□□□ 9.9
VPS53-219ENST00000576019 YKT6O15498 198 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 RAMP2O60895 175 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 CLPXO76031 633 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 TNFSF15O95150 251 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 CLDN9O95484 217 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 OAS1P00973 400 aaKnown RBP4.9□□□□□ -1.63
VPS53-219ENST00000576019 MCF2P10911 925 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 PSG1P11464 419 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 FGF3P11487 239 aaPredicted RBP4.9□□□□□ -1.63
VPS53-219ENST00000576019 CEACAM8P31997 349 aaPredicted RBP4.9□□□□□ -1.63
VPS53-219ENST00000576019 CCKBRP32239 447 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 SOX3P41225 446 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 PGFP49763 221 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 DVL1P1P54792 670 aaPredicted RBP4.9□□□□□ -1.63
VPS53-219ENST00000576019 CDR2Q01850 454 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 OGDHQ02218 1023 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 RGS1Q08116 209 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 RBBP4Q09028 425 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 TRDNQ13061 729 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 RIGQ13278 110 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 P2RY6Q15077 328 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 MRPL23Q16540 153 aaKnown RBP4.9□□□□□ -1.63
VPS53-219ENST00000576019 KNOP1Q1ED39 458 aaKnown RBP4.9□□□□□ -1.63
VPS53-219ENST00000576019 SNAI3Q3KNW1 292 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 SLC8B1Q6J4K2 584 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 GGNQ86UU5 652 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 OR4N5Q8IXE1 308 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 LINC01561Q8N1V8 128 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 FBXL16Q8N461 479 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 ZNF596Q8TC21 504 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 DLX4Q92988 240 aaPredicted RBP4.9□□□□□ -1.63
VPS53-219ENST00000576019 C18orf12Q96KH6 178 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 CATSPER2Q96P56 530 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 SLC30A2Q9BRI3 323 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 OVOL2Q9BRP0 275 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 INTS9Q9NV88 658 aaKnown RBP4.9□□□□□ -1.63
VPS53-219ENST00000576019 SIGLEC8Q9NYZ4 499 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.9□□□□□ -1.63
VPS53-219ENST00000576019 ZNHIT2Q9UHR6 403 aa4.9□□□□□ -1.63
VPS53-219ENST00000576019 ING1Q9UK53 422 aaPredicted RBP4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms