RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ZNF540Q8NDQ6 660 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 OR4F15Q8NGB8 312 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 MFSD8Q8NHS3 518 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 STK35Q8TDR2 534 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 SPATA9Q9BWV2 254 aa18.3■□□□□ 0.52
VPS53-216ENST00000574029 WDR55Q9H6Y2 383 aaPredicted RBP18.3■□□□□ 0.52
VPS53-216ENST00000574029 A0A096LPE4 126 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 A0A1W2PPZ6 126 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 FTCDNL1E5RQL4 147 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 RPL36A-HNRNPH2H7BZ11 118 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 IGKV3-15P01624 115 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 IL6P05231 212 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 ZCCHC18P0CG32 403 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 NCF2P19878 526 aaPredicted RBP18.29■□□□□ 0.52
VPS53-216ENST00000574029 EPHA3P29320 983 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 CRATP43155 626 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 SH3BGRP55822 239 aaPredicted RBP18.29■□□□□ 0.52
VPS53-216ENST00000574029 DSTNP60981 165 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 TTMPQ5BVD1 217 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 RPS26P11Q5JNZ5 115 aaPredicted RBP18.29■□□□□ 0.52
VPS53-216ENST00000574029 VHLLQ6RSH7 139 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 SERPINA11Q86U17 422 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 ANKK1Q8NFD2 765 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 NUP37Q8NFH4 326 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 BPESC1Q9GZL8 116 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 SEC61A2Q9H9S3 476 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 TPT1P8Q9HAU6 139 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 FBXO9Q9UK97 447 aaPredicted RBP18.29■□□□□ 0.52
VPS53-216ENST00000574029 ZNF232Q9UNY5 417 aa18.29■□□□□ 0.52
VPS53-216ENST00000574029 A0A0G2JPF8 293 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 HNRNPCL2B2RXH8 293 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 HNRNPCL3B7ZW38 293 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 HDAC3O15379 428 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 HNRNPCL1O60812 293 aaKnown RBP18.28■□□□□ 0.52
VPS53-216ENST00000574029 AHSA1O95433 338 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 HNRNPCL4P0DMR1 293 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 PNMTP11086 282 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 HNF1AP20823 631 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 IDH3GP51553 393 aaPredicted RBP18.28■□□□□ 0.52
VPS53-216ENST00000574029 ROR2Q01974 943 aaKnown RBP18.28■□□□□ 0.52
VPS53-216ENST00000574029 HGFACQ04756 655 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 IQCCQ4KMZ1 466 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 PDCD4Q53EL6 469 aaKnown RBP18.28■□□□□ 0.52
VPS53-216ENST00000574029 MGARPQ8TDB4 240 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 TMEM19Q96HH6 336 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 SOX7Q9BT81 388 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 PTDSS2Q9BVG9 487 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 RAB1BQ9H0U4 201 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 ARMC7Q9H6L4 198 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 ZNF442Q9H7R0 627 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 THAP1Q9NVV9 213 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 RCE1Q9Y256 329 aa18.28■□□□□ 0.52
VPS53-216ENST00000574029 TRPC5OSA6NMA1 111 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 HMGB1P1B2RPK0 211 aaPredicted RBP18.27■□□□□ 0.52
VPS53-216ENST00000574029 FZD7O75084 574 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 SNNO75324 88 aaPredicted RBP18.27■□□□□ 0.52
VPS53-216ENST00000574029 SLC22A3O75751 556 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 ZNF432O94892 652 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 STAMBPO95630 424 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 TGFAP01135 160 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 IDO1P14902 403 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 CBR1P16152 277 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 GIFP27352 417 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 CLDN17P56750 224 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 SRSF2Q01130 221 aaKnown RBP18.27■□□□□ 0.52
VPS53-216ENST00000574029 EGR4Q05215 589 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 KDM8Q8N371 416 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 THUMPD1Q9NXG2 353 aaKnown RBP18.27■□□□□ 0.52
VPS53-216ENST00000574029 IFT52Q9Y366 437 aa18.27■□□□□ 0.52
VPS53-216ENST00000574029 SASH3O75995 380 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 ANP32DO95626 131 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 CELA3BP08861 270 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 THBS4P35443 961 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 RPS5P46782 204 aaKnown RBP18.26■□□□□ 0.51
VPS53-216ENST00000574029 ARF1P84077 181 aaKnown RBP18.26■□□□□ 0.51
VPS53-216ENST00000574029 GTDC1Q4AE62 458 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 ATG16L1Q676U5 607 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 MYPOPQ86VE0 399 aaPredicted RBP18.26■□□□□ 0.51
VPS53-216ENST00000574029 GOLGA6L1Q8N7Z2 621 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 NEU4Q8WWR8 484 aaPredicted RBP18.26■□□□□ 0.51
VPS53-216ENST00000574029 SLC35B4Q969S0 331 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 SLC25A36Q96CQ1 311 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 MAELQ96JY0 434 aaKnown RBP18.26■□□□□ 0.51
VPS53-216ENST00000574029 DOK1Q99704 481 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 B3GAT1Q9P2W7 334 aa18.26■□□□□ 0.51
VPS53-216ENST00000574029 SVEP1Q4LDE5 3571 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.25■□□□□ 0.516e-6■■■□□ 18.2
VPS53-216ENST00000574029 hCG_2039718K7EN88 272 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 ZNF43P17038 809 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 NPR2P20594 1047 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 SQLEQ14534 574 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 ZNF311Q5JNZ3 666 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 C6orf89Q6UWU4 347 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 MSANTD1Q6ZTZ1 278 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 VPS33AQ96AX1 596 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 KTI12Q96EK9 354 aaPredicted RBP18.25■□□□□ 0.51
VPS53-216ENST00000574029 OXGR1Q96P68 337 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 RMND5AQ9H871 391 aa18.25■□□□□ 0.51
VPS53-216ENST00000574029 CACYBPQ9HB71 228 aaKnown RBP18.25■□□□□ 0.51
VPS53-216ENST00000574029 GPR35Q9HC97 309 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms