RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NQO1P15559 274 aaKnown RBP15.32■□□□□ 0.04
CLN3-217ENST00000565354 ATP6V1B2P21281 511 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 RBM34P42696 430 aaKnown RBP15.32■□□□□ 0.04
CLN3-217ENST00000565354 TRAM2Q15035 370 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 PDK3Q15120 406 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 GUSBP1Q15486 140 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 LINC00114Q6XXX2 140 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 WDR88Q6ZMY6 472 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 GALNT5Q7Z7M9 940 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 NKAIN4Q8IVV8 208 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 OFCC1Q8IZS5 231 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 FAM86B1Q8N7N1 296 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 OR6S1Q8NH40 331 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 RNASE6Q93091 150 aaKnown RBP15.32■□□□□ 0.04
CLN3-217ENST00000565354 PTDSS2Q9BVG9 487 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 KLHL4Q9C0H6 718 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 BCO1Q9HAY6 547 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 RHCGQ9UBD6 479 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 A4GNTQ9UNA3 340 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 NOSIPQ9Y314 301 aaKnown RBP15.32■□□□□ 0.04
CLN3-217ENST00000565354 CORINQ9Y5Q5 1042 aa15.32■□□□□ 0.04
CLN3-217ENST00000565354 RTTNQ86VV8 2226 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 ZNF724A8MTY0 619 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 ZNF814B7Z6K7 855 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 M0R082 166 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 EBAG9O00559 213 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 VAMP5O95183 116 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 LYPD3O95274 346 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 HIST1H2ABP04908 130 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 GRPRP30550 384 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 KIR2DL3P43628 341 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 H3F3AP84243 136 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 EXOC3L2Q2M3D2 409 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 LCN8Q6JVE9 175 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 Q71RC1 249 aaPredicted RBP15.31■□□□□ 0.04
CLN3-217ENST00000565354 HIST3H2AQ7L7L0 130 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 NUFIP2Q7Z417 695 aaKnown RBP15.31■□□□□ 0.04
CLN3-217ENST00000565354 CDC20BQ86Y33 519 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 ZNF100Q8IYN0 542 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 ZNF610Q8N9Z0 462 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 ZNF417Q8TAU3 575 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 TMEM255BQ8WV15 326 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 TMEM239Q8WW34 195 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 HIST1H2ACQ93077 130 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 ZNF587Q96SQ5 575 aaPredicted RBP15.31■□□□□ 0.04
CLN3-217ENST00000565354 SEPHS2Q99611 448 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 PRSS27Q9BQR3 290 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 SLC19A3Q9BZV2 496 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 RASD1Q9Y272 281 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 MED31Q9Y3C7 131 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 TLN2Q9Y4G6 2542 aa15.31■□□□□ 0.04
CLN3-217ENST00000565354 ZNF716A6NP11 495 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 A8MXE2 369 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 FTCDNL1E5RQL4 147 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 RAMP1O60894 148 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 OR6A2O95222 327 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 CH25HO95992 272 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 MT-ATP6P00846 226 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 BGLAPP02818 100 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 FABP3P05413 133 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 RHCEP18577 417 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 SLC16A1P53985 500 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 TRAP1Q12931 704 aaKnown RBP15.3■□□□□ 0.04
CLN3-217ENST00000565354 PMS2P3Q13401 168 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 RRM2BQ7LG56 351 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 KIF18BQ86Y91 864 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 POP5Q969H6 163 aaKnown RBP15.3■□□□□ 0.04
CLN3-217ENST00000565354 SMR3AQ99954 134 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 SF3B5Q9BWJ5 86 aaKnown RBP15.3■□□□□ 0.04
CLN3-217ENST00000565354 NANSQ9NR45 359 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 PLSCR4Q9NRQ2 329 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 CRIM1Q9NZV1 1036 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 JKAMPQ9P055 326 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 B3GALT5Q9Y2C3 310 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 COL6A5A8TX70 2615 aa15.3■□□□□ 0.04
CLN3-217ENST00000565354 IGKV3D-15A0A087WSY6 115 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 A6NNC1 897 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 GSC2O15499 205 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 MRPL33O75394 65 aaKnown RBP15.29■□□□□ 0.04
CLN3-217ENST00000565354 CGAP01215 116 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 MT-ND1P03886 318 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 H1F0P07305 194 aaKnown RBP15.29■□□□□ 0.04
CLN3-217ENST00000565354 POU2F1P14859 743 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 PEX19P40855 299 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 UGT2B15P54855 530 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 VLDLRP98155 873 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 MS4A2Q01362 244 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 SNTB1Q13884 538 aaKnown RBP15.29■□□□□ 0.04
CLN3-217ENST00000565354 C1DQ13901 141 aaKnown RBP15.29■□□□□ 0.04
CLN3-217ENST00000565354 FBXL19-AS1Q494R0 122 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 FGD3Q5JSP0 725 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 PAMR1Q6UXH9 720 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 CASP12Q6UXS9 341 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 ZNF730Q6ZMV8 503 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 BEND4Q6ZU67 534 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 H1FNTQ75WM6 255 aaPredicted RBP15.29■□□□□ 0.04
CLN3-217ENST00000565354 ZDHHC21Q8IVQ6 265 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 SCAIQ8N9R8 606 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 WFDC11Q8NEX6 87 aa15.29■□□□□ 0.04
CLN3-217ENST00000565354 OR9K2Q8NGE7 335 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms