RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 LSM11P83369 360 aaKnown RBP eCLIP14.9□□□□□ -0.02
CLN3-216ENST00000565316 C6orf10Q5SRN2 563 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 PHC2Q8IXK0 858 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 MIER2Q8N344 545 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 TMEM158Q8WZ71 300 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 SORCS2Q96PQ0 1159 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 ALKBH3Q96Q83 286 aaPredicted RBP14.9□□□□□ -0.02
CLN3-216ENST00000565316 REPIN1Q9BWE0 567 aaKnown RBP14.9□□□□□ -0.02
CLN3-216ENST00000565316 RSPO3Q9BXY4 272 aaPredicted RBP14.9□□□□□ -0.02
CLN3-216ENST00000565316 C12orf10Q9HB07 376 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 CACYBPQ9HB71 228 aaKnown RBP14.9□□□□□ -0.02
CLN3-216ENST00000565316 CA10Q9NS85 328 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 RCE1Q9Y256 329 aa14.9□□□□□ -0.02
CLN3-216ENST00000565316 ANK2Q01484 3957 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 B9A039 149 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 NR5A2O00482 541 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 PDE5AO76074 875 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 CRYAAP02489 173 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 CECR9P0C854 216 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 PDLIM4P50479 330 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 SNRPD2P62316 118 aaKnown RBP14.89□□□□□ -0.03
CLN3-216ENST00000565316 HOXC5Q00444 222 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 NAAAQ02083 359 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 FADDQ13158 208 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 EFNB3Q15768 340 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 ADIPOQQ15848 244 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 KDM8Q8N371 416 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 BBS10Q8TAM1 723 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 MAL2Q969L2 176 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 TLCD1Q96CP7 247 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 KTI12Q96EK9 354 aaPredicted RBP14.89□□□□□ -0.03
CLN3-216ENST00000565316 RAD21L1Q9H4I0 556 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 B3GAT1Q9P2W7 334 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 LPAR3Q9UBY5 353 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 FKBP7Q9Y680 259 aa14.89□□□□□ -0.03
CLN3-216ENST00000565316 LOC102725191A0A1B0GVB3 256 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 CLIC1O00299 241 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 ZNF500O60304 480 aaPredicted RBP14.88□□□□□ -0.03
CLN3-216ENST00000565316 IGKV3-15P01624 115 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 ETS2P15036 469 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 PRKAR1BP31321 381 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 THBS2P35442 1172 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 NR4A2P43354 598 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 GZMKP49863 264 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 MAGOHP61326 146 aaKnown RBP14.88□□□□□ -0.03
CLN3-216ENST00000565316 ROR2Q01974 943 aaKnown RBP14.88□□□□□ -0.03
CLN3-216ENST00000565316 EPGNQ6UW88 154 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 LSMEM1Q8N8F7 131 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 OR4F15Q8NGB8 312 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 SLC25A36Q96CQ1 311 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 OXGR1Q96P68 337 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 KCNS3Q9BQ31 491 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 BEX2Q9BXY8 128 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 PLK3Q9H4B4 646 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 MYOZ1Q9NP98 299 aaPredicted RBP14.88□□□□□ -0.03
CLN3-216ENST00000565316 NKIRAS1Q9NYS0 192 aa14.88□□□□□ -0.03
CLN3-216ENST00000565316 A0A096LPE4 126 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 A0A1W2PPZ6 126 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 PHF1O43189 567 aaPredicted RBP14.87□□□□□ -0.03
CLN3-216ENST00000565316 OR2T1O43869 369 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 OR4A8P0C604 315 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 CBR1P16152 277 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 ZNF16P17020 682 aaPredicted RBP14.87□□□□□ -0.03
CLN3-216ENST00000565316 ZNF43P17038 809 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 CALCRP30988 508 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 RPS5P46782 204 aaKnown RBP14.87□□□□□ -0.03
CLN3-216ENST00000565316 CLDN17P56750 224 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 TUBA1BP68363 451 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 TUBA4AP68366 448 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 ARF1P84077 181 aaKnown RBP14.87□□□□□ -0.03
CLN3-216ENST00000565316 HGFACQ04756 655 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 SLC2A7Q6PXP3 512 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 C5orf46Q6UWT4 87 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 TUBA1AQ71U36 451 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 MSRB3Q8IXL7 192 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 NUP37Q8NFH4 326 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 TAAR8Q969N4 342 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 PIMREGQ9BSJ6 248 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 SEC61A2Q9H9S3 476 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 GPR35Q9HC97 309 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 SEC14L4Q9UDX3 406 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 GMEB1Q9Y692 573 aa14.87□□□□□ -0.03
CLN3-216ENST00000565316 IGKV1D-42A0A075B6H8 117 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 LOC390937A0A1W2PQ73 354 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 AIM2O14862 343 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 LMX1BO60663 402 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 SLC43A1O75387 559 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 HTR2AP28223 471 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 PPOXP50336 477 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 LRIF1Q5T3J3 769 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 FAM69AQ5T7M9 428 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 DHRS4L2Q6PKH6 230 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 SLC46A3Q7Z3Q1 461 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 NET1Q7Z628 596 aaPredicted RBP14.86□□□□□ -0.03
CLN3-216ENST00000565316 COMTD1Q86VU5 262 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 GOLGA6L1Q8N7Z2 621 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 ADPRHL1Q8NDY3 354 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 FOXN4Q96NZ1 517 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 PRR14Q9BWN1 585 aa14.86□□□□□ -0.03
CLN3-216ENST00000565316 ZNF442Q9H7R0 627 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms