RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 TRBV4-1A0A0J9YWV2 114 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 DEFB108AA8MXU0 73 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 PLPP3O14495 311 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 GSTA4O15217 222 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 AHSA1O95433 338 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 PLGP00747 810 aaPredicted RBP8.13□□□□□ -1.11
VPS35-206ENST00000565228 ADAP00813 363 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 TSPAN19P0C672 248 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 ASAH2BP0C7U1 165 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 COX6B1P14854 86 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 COX5AP20674 150 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 CTBP2P56545 445 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 TAS2R41P59536 307 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 DBPQ10586 325 aaPredicted RBP8.13□□□□□ -1.11
VPS35-206ENST00000565228 SAMD4BQ5PRF9 694 aaKnown RBP8.13□□□□□ -1.11
VPS35-206ENST00000565228 TMEM201Q5SNT2 666 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 SWT1Q5T5J6 900 aaKnown RBP8.13□□□□□ -1.11
VPS35-206ENST00000565228 FAM69AQ5T7M9 428 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 OFCC1Q8IZS5 231 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 LRRC75AQ8NAA5 344 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 PIK3C3Q8NEB9 887 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 MOSPD2Q8NHP6 518 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 RNF217Q8TC41 542 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 UTP4Q969X6 686 aaKnown RBP8.13□□□□□ -1.11
VPS35-206ENST00000565228 DHRS1Q96LJ7 313 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 NELFAQ9H3P2 528 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 EVA1AQ9H8M9 152 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 CACYBPQ9HB71 228 aaKnown RBP8.13□□□□□ -1.11
VPS35-206ENST00000565228 GP6Q9HCN6 339 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 TIGARQ9NQ88 270 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 GLRX2Q9NS18 164 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 MED29Q9NX70 200 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 KLHL9Q9P2J3 617 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 SLC13A4Q9UKG4 626 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 PRDM4Q9UKN5 801 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 SLC9A8Q9Y2E8 581 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 EMC9Q9Y3B6 208 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 ENPP4Q9Y6X5 453 aa8.13□□□□□ -1.11
VPS35-206ENST00000565228 ZNF503-AS2A6NEH8 195 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 CDC42EP2O14613 210 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 HNRNPRO43390 633 aaKnown RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 KLF4O43474 513 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 LYZL6O75951 148 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 OR7A10O76100 309 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 POU2F1P14859 743 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 FKBP2P26885 142 aaKnown RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 ERFP50548 548 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 FXYD6P3P58550 94 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 NCALDP61601 193 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 MXRA7P84157 204 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 SORDQ00796 357 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 RUNX1T1Q06455 604 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 PPP1R8Q12972 351 aaKnown RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 POU4F3Q15319 338 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 C9orf135Q5VTT2 229 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 LCN8Q6JVE9 175 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 PODNL1Q6PEZ8 512 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 H1FNTQ75WM6 255 aaPredicted RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 GALNT5Q7Z7M9 940 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 GPAT4Q86UL3 456 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 TMEM123Q8N131 208 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 ZNF433Q8N7K0 673 aaPredicted RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 OR6S1Q8NH40 331 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 PIGXQ8TBF5 258 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 TMEM239Q8WW34 195 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 RASSF5Q8WWW0 418 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 GEMIN6Q8WXD5 167 aaKnown RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 TMEM45BQ96B21 275 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 S100PBPQ96BU1 408 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 ZC3HAV1LQ96H79 300 aaKnown RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 PYURFQ96I23 114 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 NAA11Q9BSU3 229 aaPredicted RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 THTPAQ9BU02 230 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 EMC6Q9BV81 110 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 KLHL4Q9C0H6 718 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 C1orf21Q9H246 121 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 NMNAT1Q9HAN9 279 aaPredicted RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 MRPL39Q9NYK5 338 aaKnown RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 NPAP1Q9NZP6 1156 aa8.12□□□□□ -1.11
VPS35-206ENST00000565228 C6orf203Q9P0P8 240 aaPredicted RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 NOSIPQ9Y314 301 aaKnown RBP8.12□□□□□ -1.11
VPS35-206ENST00000565228 LOC102725191A0A1B0GVB3 256 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 A0A1W2PR80 420 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 SH3D21A4FU49 640 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 C11orf98E9PRG8 122 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 IMPA2O14732 288 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 GSC2O15499 205 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 EIF1BO60739 113 aaKnown RBP8.11□□□□□ -1.11
VPS35-206ENST00000565228 CTAG2O75638 210 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 PLAUP00749 431 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 IFNA14P01570 189 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 HRGP04196 525 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 IFNW1P05000 195 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 PSMB1P20618 241 aaKnown RBP8.11□□□□□ -1.11
VPS35-206ENST00000565228 AQP2P41181 271 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 MAGEA2P43356 314 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 KIR2DL3P43628 341 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 LIMS1P48059 325 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 PCYT1AP49585 367 aa8.11□□□□□ -1.11
VPS35-206ENST00000565228 CLDN17P56750 224 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms