RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 EVPLLA8MZ36 301 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 ATP6V1G2-DDX39BF2Z307 99 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 M0R082 166 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 SSX4O60224 188 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 EDF1O60869 148 aaKnown RBP9.45□□□□□ -0.9
VPS39-208ENST00000564994 SASH3O75995 380 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 KRT33AO76009 404 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 MFN2O95140 757 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 CBLP22681 906 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 SLC6A2P23975 617 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 GRPRP30550 384 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 FABP6P51161 128 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 CLDN17P56750 224 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 PCBP3P57721 371 aaKnown RBP9.45□□□□□ -0.9
VPS39-208ENST00000564994 MTPNP58546 118 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 TUBA1BP68363 451 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 TUBA4AP68366 448 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 OR1Q1Q15612 314 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 ALG10BQ5I7T1 473 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 FAM69AQ5T7M9 428 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 ULK3Q6PHR2 472 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 TUBA1AQ71U36 451 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 ABHD12BQ7Z5M8 362 aaPredicted RBP9.45□□□□□ -0.9
VPS39-208ENST00000564994 DHDDSQ86SQ9 333 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 FBXL14Q8N1E6 418 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 DPP10Q8N608 796 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 HIPK4Q8NE63 616 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 ZNF417Q8TAU3 575 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 DNAJA4Q8WW22 397 aaPredicted RBP9.45□□□□□ -0.9
VPS39-208ENST00000564994 HTRA1Q92743 480 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 BCL2L2Q92843 193 aaPredicted RBP9.45□□□□□ -0.9
VPS39-208ENST00000564994 SLC38A4Q969I6 547 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 HS6ST2Q96MM7 605 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 ANKRD27Q96NW4 1050 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 OXGR1Q96P68 337 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 ZNF587Q96SQ5 575 aaPredicted RBP9.45□□□□□ -0.9
VPS39-208ENST00000564994 SPATA5L1Q9BVQ7 753 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 LINC00470Q9BZP3 86 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 RABEP2Q9H5N1 569 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 VIPAS39Q9H9C1 493 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 NPHS2Q9NP85 383 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 KLHL14Q9P2G3 628 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 TESQ9UGI8 421 aaKnown RBP9.45□□□□□ -0.9
VPS39-208ENST00000564994 LEF1Q9UJU2 399 aaPredicted RBP9.45□□□□□ -0.9
VPS39-208ENST00000564994 CORO2BQ9UQ03 480 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 MOKQ9UQ07 419 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 NDUFAF1Q9Y375 327 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 ATP23Q9Y6H3 246 aa9.45□□□□□ -0.9
VPS39-208ENST00000564994 SVEP1Q4LDE5 3571 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 TRAV36DV7A0A075B6V5 113 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 IGHV4-30-2A0A087WSY4 118 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 A0A087WUJ7 227 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 A0A096LPE4 126 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 A0A0B4J2E0 115 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 A0A1B0GX12 115 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 A0A1W2PPZ6 126 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 ZNF587BE7ETH6 402 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 LRRN3E7EW58 273 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 MS4A18H0YCH9 400 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 M0R3H8 397 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 AIM2O14862 343 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 TRAF3IP2O43734 574 aaPredicted RBP9.44□□□□□ -0.9
VPS39-208ENST00000564994 OR2T1O43869 369 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 WNT11O96014 354 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 HPRP00739 348 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 OPN1SWP03999 348 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 ZNF43P17038 809 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 GTF2E2P29084 291 aaKnown RBP9.44□□□□□ -0.9
VPS39-208ENST00000564994 RGS8P57771 180 aaPredicted RBP9.44□□□□□ -0.9
VPS39-208ENST00000564994 ROR2Q01974 943 aaKnown RBP9.44□□□□□ -0.9
VPS39-208ENST00000564994 NRF1Q16656 503 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 DUSP7Q16829 419 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 MS4A18Q3C1V0 323 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 C1QTNF12Q5T7M4 302 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 FAM91A1Q658Y4 838 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 ZNF544Q6NX49 715 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 KLHL24Q6TFL4 600 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 H1FNTQ75WM6 255 aaPredicted RBP9.44□□□□□ -0.9
VPS39-208ENST00000564994 ARMC8Q8IUR7 673 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 WDFY1Q8IWB7 410 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 DEPDC4Q8N2C3 294 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 SMYD1Q8NB12 490 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 GPR32P1Q8NGA4 272 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 ZNF837Q96EG3 531 aaPredicted RBP9.44□□□□□ -0.9
VPS39-208ENST00000564994 SLC47A1Q96FL8 570 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 SLC41A3Q96GZ6 507 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 ZNF607Q96SK3 696 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 CGREF1Q99674 301 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 SEC61A2Q9H9S3 476 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 BARX1Q9HBU1 254 aaPredicted RBP9.44□□□□□ -0.9
VPS39-208ENST00000564994 OBP2BQ9NPH6 170 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 RCE1Q9Y256 329 aa9.44□□□□□ -0.9
VPS39-208ENST00000564994 COL6A5A8TX70 2615 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 RTTNQ86VV8 2226 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 A0A096LNT2 108 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 ARPC4-TTLL3A0A0A6YYG9 625 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 A0A0G2JND7 137 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 LOC102725191A0A1B0GVB3 256 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 ZNF503-AS2A6NEH8 195 aa9.43□□□□□ -0.9
VPS39-208ENST00000564994 PRORSD1PA6NEY8 169 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms