RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 DVL3Q92997 716 aaPredicted RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 SLC25A28Q96A46 364 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 LRRC58Q96CX6 371 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 ZG16BQ96DA0 208 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 CCT8L2Q96SF2 557 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 GPA33Q99795 319 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 DUSP26Q9BV47 211 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 LINC00470Q9BZP3 86 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 TSPYL1Q9H0U9 437 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 OR51I1Q9H343 314 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 ZMAT3Q9HA38 289 aaKnown RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 EXOSC3Q9NQT5 275 aaKnown RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 DCDC2Q9UHG0 476 aa6.27□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF346Q9UL40 294 aaKnown RBP6.27□□□□□ -1.41
VPS4A-203ENST00000564399 RNF103-CHMP3A0A140T963 221 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF503-AS2A6NEH8 195 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 TPD52L2O43399 206 aaKnown RBP6.26□□□□□ -1.41
VPS4A-203ENST00000564399 PEX11AO75192 247 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 SLC43A1O75387 559 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 RP2O75695 350 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 SEC14L2O76054 403 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF432O94892 652 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 AGR2O95994 175 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 HLA-HP01893 362 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 CD79AP11912 226 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 UQCRBP14927 111 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 MDKP21741 143 aaPredicted RBP6.26□□□□□ -1.41
VPS4A-203ENST00000564399 OMGP23515 440 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 GCH1P30793 250 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 PCGF2P35227 344 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 GLRXP35754 106 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 MAGEB1P43366 347 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 CLDN17P56750 224 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 ETF1P62495 437 aaKnown RBP6.26□□□□□ -1.41
VPS4A-203ENST00000564399 CCL8P80075 99 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 LCN2P80188 198 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 PIGFQ07326 219 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 BNIP2Q12982 314 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 OCLNQ16625 522 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 NKPD1Q17RQ9 610 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 CEACAM16Q2WEN9 425 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 PGS1Q32NB8 556 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 GPAT3Q53EU6 434 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 ARMCX4Q5H9R4 360 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 C8orf74Q6P047 294 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 TNFAIP8L2Q6P589 184 aaPredicted RBP6.26□□□□□ -1.41
VPS4A-203ENST00000564399 LEG1Q6P5S2 330 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 TMEM154Q6P9G4 183 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 FRRS1Q6ZNA5 592 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 DOK3Q7L591 496 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 RETREG3Q86VR2 466 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 EPHX4Q8IUS5 362 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 CCDC36Q8IYA8 594 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 KRTCAP2Q8N6L1 136 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 MGARPQ8TDB4 240 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 OIT3Q8WWZ8 545 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 TAF15Q92804 592 aaKnown RBP eCLIP6.26□□□□□ -1.41
VPS4A-203ENST00000564399 ROPN1LQ96C74 230 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 COQ8BQ96D53 544 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 TIMD4Q96H15 378 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 PPP3R2Q96LZ3 170 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 C1orf50Q9BV19 199 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 TUBB1Q9H4B7 451 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF385DQ9H6B1 395 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 GPR35Q9HC97 309 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 POLE3Q9NRF9 147 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 MYEF2Q9P2K5 600 aaKnown RBP6.26□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF69Q9UC07 566 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 GIMAP2Q9UG22 337 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 OPN4Q9UHM6 478 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 GPR160Q9UJ42 338 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 RASD1Q9Y272 281 aa6.26□□□□□ -1.41
VPS4A-203ENST00000564399 NOTCH3Q9UM47 2321 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 CFAP73A6NFT4 308 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 A8MVM7 634 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 CLDN25C9JDP6 229 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 RPL36A-HNRNPH2H7BZ11 118 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 DEAF1O75398 565 aaPredicted RBP6.25□□□□□ -1.41
VPS4A-203ENST00000564399 LYPLA1O75608 230 aaPredicted RBP6.25□□□□□ -1.41
VPS4A-203ENST00000564399 KNG1P01042 644 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 FSHBP01225 129 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 IGHV2-5P01817 119 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 RNASE1P07998 156 aaKnown RBP6.25□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF35P13682 527 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 ZNF43P17038 809 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 PRPS1L1P21108 318 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 LSP1P33241 339 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 P2RY4P51582 365 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 SELENOVP59797 346 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 DNAJB13P59910 316 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 TEKQ02763 1124 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 PLAURQ03405 335 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 SRSF4Q08170 494 aaKnown RBP6.25□□□□□ -1.41
VPS4A-203ENST00000564399 C1DQ13901 141 aaKnown RBP6.25□□□□□ -1.41
VPS4A-203ENST00000564399 GSG1Q2KHT4 349 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 SAXO2Q658L1 398 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 C17orf107Q6ZR85 190 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 C1QL4Q86Z23 238 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 WDFY1Q8IWB7 410 aa6.25□□□□□ -1.41
VPS4A-203ENST00000564399 CLECL1Q8IZS7 167 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms