RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ELOVL1Q9BW60 279 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 SCNM1Q9BWG6 230 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 NMNAT2Q9BZQ4 307 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ILKAPQ9H0C8 392 aaPredicted RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 C1orf198Q9H425 327 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 FZD8Q9H461 694 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ZDHHC6Q9H6R6 413 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 TLE6Q9H808 572 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 KCNK9Q9NPC2 374 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 THSD1Q9NS62 852 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 PLEKHJ1Q9NW61 149 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 ALKBH4Q9NXW9 302 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 PHF11Q9UIL8 331 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 PURGQ9UJV8 347 aaKnown RBP4.61□□□□□ -1.67
VPS35-205ENST00000563984 SAR1BQ9Y6B6 198 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 CEPT1Q9Y6K0 416 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 MYH13Q9UKX3 1938 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 CEMIPQ8WUJ3 1361 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 HFM1A2PYH4 1435 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 PIK3C2GO75747 1445 aa4.61□□□□□ -1.67
VPS35-205ENST00000563984 CHD5Q8TDI0 1954 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 A0A0G2JMP0 313 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 A0A0X1KG70 313 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 GXYLT2A0PJZ3 443 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 HYKKA2RU49 373 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 FAM90A10PA6NDY2 464 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 FAM90A20PA6NIJ5 464 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ANKRD30BLA7E2S9 258 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 OR11H12B2RN74 326 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 C5orf58C9J3I9 102 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 E7EWF7 191 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 J3KTA2 159 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 CYB561D2O14569 222 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 RFXANKO14593 260 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 TP53I11O14683 189 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 KLF11O14901 512 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 MAGEB4O15481 346 aaPredicted RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 NDUFS4O43181 175 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 B4GALT5O43286 388 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 XRCC2O43543 280 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 TPST1O60507 370 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ZNF780AO75290 641 aaPredicted RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 KHDRBS3O75525 346 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 RP2O75695 350 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 GLSO94925 669 aaPredicted RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 OR2F2O95006 317 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 TNFAIP8O95379 198 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 TTC4O95801 387 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 TXNDC12O95881 172 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 IFNA17P01571 189 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 C1QBP02746 253 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ALDOAP04075 364 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 RLN2P04090 185 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 RPLP0P05388 317 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 OR10J4P0C629 311 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 BCKDHBP21953 392 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 CA4P22748 312 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 RBM34P42696 430 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 NPBWR2P48146 333 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 SOX2P48431 317 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 GCLMP48507 274 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 CAMPP49913 170 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 PDLIM4P50479 330 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 PPT1P50897 306 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ART1P52961 327 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 DLX5P56178 289 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 RPS20P60866 119 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 OR8G1Q15617 311 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 RPE65Q16518 533 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 CARTPTQ16568 116 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ZNF239Q16600 458 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 MEP1AQ16819 746 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 CYP51A1Q16850 503 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 TATDN3Q17R31 274 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ASTE1Q2TB18 679 aaPredicted RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 PGGHGQ32M88 737 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 CBWD5Q5RIA9 395 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 SYT6Q5T7P8 510 aaPredicted RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 SUSD4Q5VX71 490 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 REP15Q6BDI9 236 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 DHRS7BQ6IAN0 325 aaPredicted RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 DGAT2L7PQ6IED9 249 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ADAM5Q6NVV9 412 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 SLC27A1Q6PCB7 646 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ZNF790Q6PG37 636 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 DLK2Q6UY11 383 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 TMEM179Q6ZVK1 233 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 PIGWQ7Z7B1 504 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 COMMD7Q86VX2 200 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 SERPINA9Q86WD7 417 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 SKA3Q8IX90 412 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ZC3H3Q8IXZ2 948 aaKnown RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 DAW1Q8N136 415 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 DNAJC22Q8N4W6 341 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 EXD3Q8N9H8 876 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 ZNF383Q8NA42 475 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 SLC44A5Q8NCS7 719 aa4.6□□□□□ -1.67
VPS35-205ENST00000563984 CHDHQ8NE62 594 aaPredicted RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 ZNF548Q8NEK5 533 aaPredicted RBP4.6□□□□□ -1.67
VPS35-205ENST00000563984 OR11H1Q8NG94 326 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms